Sol Genomics Network

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Unigene SGN-U270104

Unigene Basic Information

Unigene ID:	SGN-U270104
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270104
mRNA sequence:	Length: 1965 bp

>SGN-U270104 Solanum tuberosum #4 (24 members)
GAATAGTCTCAAGTTTCTCTTTTCCCACTTCATCTTCTTCATTCATGACGACTTCTTTCACCGACCTTCTTGCTTCTGATGATTATCCTA
CCAAAGGACTTGGTGATAGAATTGCAGAGAGGACTGGTTCTGGAGTTCCTAAATTCAAGTCTCTTCCACCTCCTTCACTCCCTTTATCTC
CTCCTCCTTTTTCCCCTTCCTCTTACTTTGCTATTCCTCCTGGTTTAAGTCCAACTGAACTTTTAGACTCCCCTGTTCTTTTGTCTTCTT
CAAACCTTCTTCCATCTCCGACAACAGGGAGTTTTCCATCTCATGCTTTTAATTGGAAGAGCAGTAGCCATCAGGATGTGAAACAGGAAG
ACAAAAACTACTCAGATTTTTCTTTCCAGCCTCAAGTAGGGACAGCTGCATCAATCTCTCAATCCCAAACTAACCATGTCCCTTTGGGGC
AGCAAGCATGGAATTATCAAGAGCCCACAAAACAGAATGATCAAAATTCTAATGGAAGATCTGAATTCAACACTACACAGAGTTTTATGC
AGAATAATAATGATCAGAACAATAGTGGAAACCAATACAACCAGAGTATAAGGGAGCAGAAAAGGTCAGATGATGGATACAATTGGAGGA
AATACGGGCAGAAACAAGTAAAAGGTAGTGAAAATCCGAGAAGCTACTACAAGTGTACATACCCAAATTGTCCCACCAAGAAGAAGGTTG
AGAGATCTTTAGATGGCCAAATTACTGAAATTGTGTACAAGGGTAATCACAACCATCCAAAGCCTCAGTCTACCAGAAGGTCGTCGTCAT
CCACAGCTTCATCTGCAATCCAATCTTACAATACACAAACTAATGAAATCCCAGATCATCAATCCTATGGTTCAAATGGCACAGGACAAA
TGGATTCGGTTGCAACACCTGAGAATTCTTCTATTTCATTTGGGGATGATGATCATGAGCACACTTCTCAAAAGAGTAGTAGGTCAAGAG
GAGATGATCTTGATGAAGAGGAACCAGACTCAAAAAGATGGAAAAGAGAAAACGAAAGTGAAGGTCTATCTGCACTAGGAGGGAGTAGGA
CAGTTAGAGAACCTAGAGTTGTAGTTCAAACTACAAGTGATATCGATATCCTAGATGATGGTTATAGATGGAGGAAGTATGGTCAAAAAG
TAGTGAAAGGAAATCCTAATCCCAGGAGCTACTACAAATGCACAAGTACGGGATGTCCAGTAAGAAAACATGTGGAAAGGGCATCACAAG
ACATAAGGTCAGTGATAACAACCTATGAAGGGAAGCACAACCATGATGTTCCAGCAGCAAGGGGCAGTGGCAACCACTCAATTAACCGAC
CTATGGCACCGACCATAAGGCCTACTGTGACATCTCATCAATCCAACTATCAAGTTCCATTGCAAAGTATAAGGCCACAACAGTCTGAAA
TGGGAGCACCCTTTACGCTTGAGATGTTGCAGAGGCCTAATAATTATGGTATCTCAGGATATGCAAATTCAGGGGATTCATACGAAAACC
AAGTTCAGGACAACAATGTGTTTTCGAGAACTAAGGACGAGCCTCGAGATGACATGTTTATGGAGTCATTGCTTTGCTGAAACTGGAATC
CTAGAAAGGAGCACGAATTGAAGTTTATGAAACGAAAAACTGAACCTTTTGTTTTTTTTTTGCATAAAGAATATGATAGGAAGCATTTTG
ATTTCATTTGTTAATAGATCATATACTGTTTATTTTTTTGTGTGTACATTTTGTACTAGGAAATTTGTTTGTTGTAAATTCAATCAAATG
TGGTGTAGAAGTTCATGCAGTTACCACTGTTATGGGGGTTTATTCTTTAGGATAGGAATGTAAATCCCCAACTCATGACTATATGACACT
GATTCTTTATTTCTATCAGATTTTCAAGTTTTATATATTAAAGAAGATTGCAGTTTTTCAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
wrky1	WRKY DNA binding protein	DNA binding
AY615273	WRKY1
pps8	double WRKY type transfactor

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	6
Solanum tuberosum	STM	mixed tissues	14805	8
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	47	WRKY	241
2	22003	WRKY	167
5	56319	WRKY	83
1.1	101416	DNA-binding WRKY - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Biological Process: regulation of transcription (GO:0045449)	230
2	118439	DNA-binding WRKY - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Biological Process: regulation of transcription (GO:0045449)	155
5	129011	DNA-binding WRKY - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Biological Process: regulation of transcription (GO:0045449)	68

Preceding Unigenes (1)

Unigene	Build
SGN-U244420	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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