Sol Genomics Network

Unigene SGN-U270121

Unigene Basic Information

Unigene ID:	SGN-U270121
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270121
mRNA sequence:	Length: 1776 bp

>SGN-U270121 Solanum tuberosum #4 (24 members)
AAAAAATAAATTGCACTTCTCACTCACCAAACTGACTTGTGTGTTCACAACACTTGCCTCCTAACTGTTTTGAGCCGAGGTGCTACATTG
CCAGTACGGGCATCACTTTGCTTGGAATTTGAACTAAGAGGAAAATTTTAATTCCTTATAATGTCTTCTAAGGCATTGGACTATGAGAAT
CTGAACGAAAATGTCAAGAAGTGCCAATATGCTGTCAGAGGTGAGCTGTACCTTCGAGCTTCTGAGCTTCAGAAGGAAGGCAAAAAGATC
ATCTTCACGAATGTTGGTAACCCCCATGCCCTTGGGCAGAAGCCACTGACATTTCCACGCCAGGTCATTGCTCTCTGTCAAGCTCCATTT
TTACTGGATGATCCGAATGTGGGACTCATATTCCCTGCTGATGCAATTGCAAGGGCTAAACAGTTTCTTGGGATGACTTCTGGTGGTCTA
GGTGCTTATAGTGACTCCCGAGGCATTCCCGGTGTAAGGAAAGAAGTTGCAGACTTCATTGAGAGACGTGATGGATATCCAAGTGATCCA
GAACTCATATTTCTCACAGATGGTGCCAGCAAAGGAGTAATGCAGATCTTGAACAGTATCATTCGCGGCCCAAGTGATGGGATATTGGTC
CCTGTTCCCCAGTATCCACTATACTCAGCTTCAATACAATTATTGGGGGGTTCTCTTGTTCCTTACTACCTTGAAGAGACTGCAAACTGG
GGTCTTGATATCAATGACCTTCGCCAATCAGTTGCAAAGGCACGATACAAGGGAATAACTGTACGAGCTATGGTGATTATAAACCCTGGA
AATCCCACTGGACAATGTCTTAGTGTGGCAAATCTTAAGCAAATAATTCAATTCTGTCACCAAGAAAATTTAGTATTACTTGGAGACGAA
GTTTATCAGCAAAACATTTACCAAGATGAGCGCCCCTTCATAAGTGCAAGAAAGGTTTTATTGGATATGGGACTACCATTAAGCAAGGAG
GTTCAGCTTGTCTCATTTCACACTGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGAGGATACTTTGAGATGACCAACATTCCT
CCAAAGGCCGTTGAAGAAATATACAAGGTTGCTTCAATTTCGCTCAGTCCAAATGTACCTGGACAGATATTTATGGGGCTCATGGTGAAC
CCCCCTAAACCTGGAGATATCTCATATGACCAATATGCCAGAGAGAGTAAGGGTATCCTTGAGTCATTAAGGAGGAGGGCACACATGATG
ACTGATGGTTTCAACAGCTGCAGAAATGTTGTTTGTAATTTCACAGAAGGTGCAATGTATTCCTTCCCGCAAATACGATTGCCTCCTAGA
GCAATAGAGACTGCAAACAAGCTTGGGAAAGCTGCTGATGTTTTCTATTGTCTGAGGCTGTTGGAAGCAACTGGCATCTCCACCGTCCCT
GGTTCAGGTTTCGGTCAAAAGGAAGGGGTGTTCCATCTAAGGACAACCATCTTGCCAGCTGAAGAAGACATGCCAGCAATAATGGAAAGT
TTCAAAAAGTTCAATGATGAATTCATGGAGAAATATGAGGACCACAAAGGTTATTCCAGGATGTAATAGAAAAAAGATGGTTGGAGTATT
TATTGTATATGTTTTTACCTTACAACTACTGCAACTCTATTTACAAACAAATTATGGTACACTACATCTCTTCCCCCCTCTTTTTAGCCT
TCATTCATGTGTTTATATATATATGACTTGCTAGATTTACTATGTGGTCTATAGATTTCCTTTTTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	8
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	83	Tyr_amintrans_an Tyr_Nic_amintran Aminotrans_I/II	151
2	22434	Tyr_amintrans_an Tyr_Nic_amintran Aminotrans_I/II ACC_synthase HisP_aminotrans	29
5	56610	Tyr_amintrans_an Tyr_Nic_amintran Aminotrans_I/II ACC_synthase HisP_aminotrans	29
1.1	101453	Aminotransferase class I and II - Biological Process: biosynthesis (GO:0009058) - Molecular Function: transferase activity transferring nitrogenous groups (GO:0016769)	139
2	118799	Aminotransferase class I and II - Biological Process: biosynthesis (GO:0009058) - Molecular Function: transferase activity transferring nitrogenous groups (GO:0016769) 1-aminocyclopropane-1-carboxylate synthase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847)	29
5	129235	Aminotransferase class I and II - Biological Process: biosynthesis (GO:0009058) - Molecular Function: transferase activity transferring nitrogenous groups (GO:0016769) 1-aminocyclopropane-1-carboxylate synthase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847)	29

Preceding Unigenes (1)

Unigene	Build
SGN-U244502	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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