Sol Genomics Network

Unigene SGN-U270184

Unigene Basic Information

Unigene ID:	SGN-U270184
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270184
mRNA sequence:	Length: 1252 bp

>SGN-U270184 Solanum tuberosum #4 (23 members)
GTTGCTATAAACCGTGTATATAAATACTCCATTTTCTTCACAAGATTCATTCTTTTTCGAATACCATTTTTCTCTTTCTCTTGCAAGATT
TACTCTTTCTCTTTCCATTATGGGTTTCCCAGCTAATGGTTCATCACAAGATAAGCCATACAAGTTCTTGATCTATGGCCGAACCGGTTG
GATTGGTGGCTTACTCGGTAAGCTCTGTGAAGCTCAAGGCATAGAGTACAAATACGGGTCGGGTCGATTAGAGAATCGGAGCTCCTTAGA
GTCCGACCTCACCACCGTCAAGCCGACCCATGTGTTCAACGCCGCCGGTGTTACCGGCCGGCCAAATGTTGACTGGTGTGAATCCCATAA
GGTGGAGACCATCAGAGCTAATGTGGTCGGCACGCTGACGCTTGCTGATGTTTGTAGAGAGAAAGGGTTGATCCTTATCAACTATGCTAC
TGGGTGTATTTTTGAATACGATTCGGGTCATACATTAGGGTCGGGTAACGGATTCAAGGAAGAGGATACTCCTAATTTCATCGGATCTTT
CTATTCAAAGACTAAAGCTATGGTGGAGGAATTGCTGAAAAACTACGACAACGTCTGTACACTACGAGTCAGAATGCCCATCTCTGCAGA
CTTGACCAACCCCCGAAACTTCATCACCAAGATCAGTCGATACGAGAAGGTAGTAGACATCCCAAACTCGATGACAATCTTGGATGAACT
TCTCCCTATTTCCATCGAGATGGCAAAGAGAAACCTCACTGGCATATGGAACTTCACAAATCCTGGAGTTGTTAGCCATAACGAGATCCT
GGAGATGTACCGTGACTATATTGACCCAAGCTTCCGCTGGAAGAACTTCACAATCGAGGAGCAAGCAAAGGTCATTGTCGCTCCACGAAG
CAACAATGAGCTCGATGCTTCGAAATTGAGCAAGGAATTCCCTGAAATGAAGTCCATCAAGGAGTCCCTCATTGAGAATGTGTTCAAGCC
AAATAGGAAGACACCAGTAGCTTGAAAACTTAGAGAAAAGATCCAATTTTTATGTCTTGTTCAATGTATCAACTATGTTTTCAGTCCTAA
TATTTGGGGTTGGGGTTTCTCTCTTCTCTCTTTGTTTCTGATTTTCAGCATCTTTTTTCCTTTATTGTTGTATTGAATGTTGTAATGGTA
TTTATTTCATCATGAATAAAATCGAAAAATGATACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	9	DnaJ_N	612
2	22516	dTDP_gluc_dehyt GalE Epimerase_Dh TDP_rham_reduct	26
5	56676	dTDP_gluc_dehyt GalE Epimerase_Dh TDP_rham_reduct	26
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118929	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	25
5	129321	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	25

Preceding Unigenes (1)

Unigene	Build
SGN-U244490	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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