Sol Genomics Network

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Unigene SGN-U270308

Unigene Basic Information

Unigene ID:	SGN-U270308
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270308
mRNA sequence:	Length: 1810 bp

>SGN-U270308 Solanum tuberosum #4 (18 members)
GAGAGAGTATAGGCCTAATGCAAGGGCAACGGAGTGCCATCGGATCCCTGCCAGAAACTTTGGGTTTTACTCATGGTTCAACATCGAGTG
ATGGGGGTATAGATCAGCAGATTATCTTCTAAACAGCTTATGGCGTTCTATACCTGCTCCAAATAATGTGACTGCAGGTGCTAATAGCCC
TGCACCAACAGAAAGTAGAAGAAACATCAGTTTGCCAGTGCCGGGAAATCCAAGACTTGGGCTCGCCATGGGTGGCACCACTATGGAAGG
TCCTGTTGCATTGCCTGCTTCAAGAAGAGCAGAAAGTTACCGTAGAAATTTCAGGCTGAGGATCAATGGCTCTCATCAGCAAGTTCCTAT
TCCTGGTAATACGTTTCCTACTGTGGGTAATGATAGAAATGTTACCATGTCTGACTGGGACGCATTGAGGCTGCTTCCTAATGAGTCTTT
GGATTCGAGGTCCGTGTCTGCTGCAGATAATGTAAATCCCCGAAGCCAACCAGTTGTGGGGCCGGTTCCTTCTCTGCGACGAAGTGCACA
GAGGTGGGATTCATCAAGTTCAAGAGCTGGCAGTTCATCAAGTTATTCTGTTTTTGGTGAGAGGAATTCTGCAGCATATGAACAACCAAG
CTCAAGAACTGTGCCCAGAAACATTTCGCAGCATCCAATGTTCATACCCGCTAGTGACTTGAGAAATTTGAACCAAAATCCTGTCAACTG
GGGTTTAGCTGGTGGAAATATTTCCATTGCTGGAAATGTTGCATCTGCTTCTCGGAGTGGTCCTAGCTCAGTAGCCCCTTCCTCTTCTCC
TGGTTGGGTGGAACACAGAAATCCTCAGCAATATCCTCGACGACTCTCAGAATATGTTCGTAGATCTATGTTGTCTGCAGCTGTCAGTGA
ACCTGGAAGTCACAATGGTAACACTCCGCCACATTTGAGTTCTGCTGCCTCACAGGAGATGGGGCTTTCTGGCCATCCCGGGCATCGTCC
ATCAAGTTCGAGGTCAGCATTGTTGTTGGAGAGACAACTCGATGGTGCAATGGGAGTTCCATATTCCTGGAGGACTTTGGCTGCTGCCGG
TGAAGGAAGAGGCAGGCTAGTTTCCGAGATTCGCAATGTATTGGATCTAATGCGCAGGGGAGAGAGCTTAAGATTTGAGGACATTATGAT
CCTTGATCAGTCAGGGTTCTTTGGGATGGTGGATATTCAGGATCGCCATCGCGATATGCGTCTTGATGTTGATAACATGTCCTATGAGGA
ATTACTGGCGCTTGAGGAGCGCATCGGGAATGTCTGCACTGGGCTGACTGAAGAAACCATTTTGAATCGTCTGAAGCAACGGAAGCATGT
ACGCATTAGAACAGAAGAAACCAAGGATGCTGCGCCATGCTGTATTTGTCAGGAAGAATACAAGGATGGTGAGGATCTTGGGAAGCTGGA
TTGTGGCCATGATTTTCATGCCAACTGCGTTAAACAATGGCTCATGCAGAAGAATTTGTGCCCAATTTGCAAAACAACAGGACTCAATAC
TTCAGGAAAGCATTGATCCATGGAAGTTGGATGTTCCGGTTGGGCCATGGAAGGTTGACACAAAGCGTGTCTACGCGTTTGGTCCATGAG
TTCATTTTGAGAAAGATCTATGTATTTTTCTCATTAATTTTATTGTGACCTCTGCTTAGAGGAGTTATTTTAGAGATAGAAGAAGCACTA
GCTGCAATTAGGGGCATTAGGCAAGAGTTACATTATTTGGTTGTTTGGAAATTTACAATCTAACTTTCCAATTTATTGATACCTTTGAAT
AAAAAAAGTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	8
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (18)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	10	Znf_ring	594
2	22111	Znf_ring	64
5	56871	Znf_PHD Znf_ring	21
1.1	101372	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	566
2	118581	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	49
5	129527	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U244582	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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