Sol Genomics Network

Unigene SGN-U270343

Unigene Basic Information

Unigene ID:	SGN-U270343
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270343
mRNA sequence:	Length: 1754 bp

>SGN-U270343 Solanum tuberosum #4 (21 members)
CTGAAACAGACATTATAACAGACACACGGCTAAAACATACACGTATTTATTTCCCTCAAGCAATCGCAATTCGCATCCACACGGCTAAAA
CATACACGTATTTATTTCCCTCAAGCAATCGCAATTCGCATCCACTTAGCAGATTGAAAAAAAAAATGATACCGATAATGAGTTCTGCTC
CTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTACAATTCCGGGCAGCTACGGATTGCCGTTATTAGGGCCAATCGCCGATCGAT
TAGACTATTTCTGGTTCCAAAAGCCCGAAAATTTCTTCACCAAGAGAATGGAAAAGCACAAAAGCACGGTTTTCAGAACGAACGTACCGC
CGTGTTTTCCGTTTGTAGGCAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTG
TAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCTAGTGTGGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTG
AACCTAAACATGCCCAGATTAAGAATTTTTCACTGGACATTCTAAAAAGAAGCTCAAAAACATGGGTGCCTACACTCCTTAAAGAGCTTG
ATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCAAAGGAAGCTTCTCTTCTTCCCTGCACTCCAAAAATTCCTCTTTAACTTC
TTCTCCCTCACTCTCCTCGGCGCTGATCCATCAGTCTCCCCGGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATT
CAATTAGCACCTACTGTTAGCATTGGTGTTCTTCAACCCCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAA
GGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCTAAGGAAGTGTTAAACAGGGCACAAACAGAGTTTCAGCTCACAGAACAA
GAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGTTTCACCATTTTCTTGCCAACCCTTTTGGGGAATCTTGGA
GATGAGAAAAACGCGGAGATGCAAGAGAAACTAAGGAAAGAAGTAAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGT
GTTAAAGAAATGGAACTCGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTGCCAAGTCAATATGCAAGAGCAAGAAAA
GACTTTAAGCTGAGCTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAACTACTTTGTGGTTATCAGCCATTAGTGATGAAAGATCCA
AAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAAT
GGTCCACAGACTGGGAGACCTACTGAATCAAACAAGCAATGTTCTGCTAAAGATATGGTTCCTCTAACTGCTTCTTTGATTGTGGCTTAC
ATTTTCCAAAAGTATGATTCTGTGAGTTTCTCATCTGGTTCACTTAGATCTGTGAAAAAAGCCAGTTGAGTTTTGGGCTGTGTAGCAGCA
AAATTTAAGCTTGCTAGACATGTTGAAATTAAGTCATCAGTGGCTGGCTTTTCTCACCTCCTGTTGTGATTTGTAATATAAATTCTCAAA
TAAAAGTTCAAGAAGAGTGCTTGTTTTCTTTCTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
hpl	fatty acid hydroperoxide lyase	fatty acid hydroperoxide lyase

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	MXFL	Floral buds	6603	3
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	7
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	525	Cytochrome_P450 EP450IV	34
2	22360	Cytochrome_P450 EP450IV	33
5	56555	Cytochrome_P450 EP450IV	32
1.1	101962	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	27
2	118907	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	26
5	129313	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	26

Preceding Unigenes (2)

Unigene	Build
SGN-U247715	Solanum tuberosum #3
SGN-U249254	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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