Sol Genomics Network

Unigene SGN-U270442

Unigene Basic Information

Unigene ID:	SGN-U270442
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270442
mRNA sequence:	Length: 1674 bp

>SGN-U270442 Solanum tuberosum #4 (20 members)
TAAATGTCTGGTACCGGGGATATTATCTTGCAACATCTCGTGAATTGACTCGGCTCGACTCAATTACAAAAGCACCTGTTATTCATCATT
TCTCTGAAAGCATCTCAGGTGTTATGACTATACGTTGCTTTAGGAAGCAGGATATGTTTAGTCAAGAAAACGTTAACCGAGTGAACGCCA
ATCTGCGAATGGATTTCCACAACAATGGATCCAATGAGTGGTTGGGCTTCCGACTAGAACTGCTTGGAAGCTTGCTTCTCTGTGTTTCTG
CAATGTTCATGATTGTCTTACCTAGCAGCATCATCAAGCCAGAGAATGTTGGCTTATCGTTATCATATGGTTTGTCCCTTAACAGTGTGC
TATTCTGGTCCGTCTTTGTGAGTTGCTTTGTGGAAAACAAAATGGTTTCTGTTGAAAGATTAAAACAGTTCTCATGCATACCATCAGAAG
CTGAGTGGCGAAAAAAGGATTTTGTCCCACCTTCAGATTGGCCGAGCCATGGCAATGTTGAGCTTGAAGACTTACAAGTTAGATACCGTC
CAAACACTCCTCTAGTGCTTAAAGGAATTACTCTCAACATTAGAGGGGGAGAGAAGATTGGTGTTGTTGGTCGTACTGGAGGTGGAAAAT
CAACACTAATTCAAGTTTTCTTCCGTTTGGTGGAGCCTGCAGCTGGAAGAATAGTCATTGACGGCATTGACATATCCAGGCTCGGGCTTC
ATGATCTTAGATCTCGCTTCGGAATCATTCCCCAAGAACCAGTTCTTTTTGAAGGAACTGTGAGAAGCAACATTGACCCCATTGGACAAT
ATTCAGATGATGAAATTTGGAAGAGCCTCGATCGCTGCCAACTGAAAGATGTGGTGTCTTCAAAACCCGAAAAGCTTGACTCACCAGTTG
TTGATAATGGAGATAACTGGAGTGTCGGGCAGAGGCAGCTTCTTTGCTTAGGAAGAGTGATGCTAAAACGCAGCAGACTTCTATTTATGG
ACGAGGCAACCGCCTCTGTTGATTCACAGACAGATGCTGTGATTCAGAAAATCATCCGCGAGGACTTCAACGCCTGTACTATAATCAGCA
TTGCCCACAGAATACCAACAGTCATGGACTGCGATAGAGTTCTTGTTGTAGATGCAGGAATAGCAAAAGAGTTTGACAAACCATCTCATT
TGCTGGAAAGGCCTTCACTTTTTGGGGCTTTGGTTCAAGAATATGCCAACAGATCATCTGAGCTCTAACCACACACCATTTTGGCTTTTC
TTGGTGTTTTGCTGTAGTTTGCAGAATACCTATCCAAATATTTACATTAGATTCCCAAATAGTATCATCTCCTACTAGTCTATTTAGTAT
ATTTTGTTGAGTTGTAACAATATTGACATTAAAACTATTGTAGTTGCTGTTTCCATTAATAAAAAACAACTAGGTTATTTTATGTAGACT
GATTTTTCCTCTTCCAATCCGCAAACTGTTAGTTGAAGATGGAGTTGTGTGTGGTTATACTTTTGCAAAGAATATTTGAAATAATGTTTT
TGTTTGAATGTATCTAAATATAACTTCAAAAGTGAAAAGTGAGTTGAAAAATAGGTTATAAGCGTTCAAATTTTGGAGAAGTTTTTATGC
GTGTATTTAAGTGTCCGTTACGTAAATAAATTGATCATAAAGTATGCTAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	16	ThiQ_ABC_transpt ABC_transporter Sulph_transpt1 CbiN_ATP	404
2	22157	ThiQ_ABC_transpt ABC_transporter ProV Sulph_transpt1 Sp/ptABC_transpt CbiN_ATP	52
5	56400	ThiQ_ABC_transpt ABC_transporter ProV Sulph_transpt1 Sp/ptABC_transpt CbiN_ATP	50
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118590	ABC transporter transmembrane region type 1 - Molecular Function: ATP binding (GO:0005524) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) - Molecular Function: ATPase activity coupled to transmembrane movement of substances (GO:0042626) ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	47
5	129077	ABC transporter transmembrane region type 1 - Molecular Function: ATP binding (GO:0005524) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) - Molecular Function: ATPase activity coupled to transmembrane movement of substances (GO:0042626) ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	46

Preceding Unigenes (1)

Unigene	Build
SGN-U244953	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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