Sol Genomics Network

Unigene SGN-U270443

Unigene Basic Information

Unigene ID:	SGN-U270443
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270443
mRNA sequence:	Length: 1680 bp

>SGN-U270443 Solanum tuberosum #4 (20 members)
CTCGCGTCCGATTTACGCTCTTTCCTTACCCCACTCCCCCTCAAAATTGCGGCCTTATTACCTCAAAAATTGTCTGGGTTCTTCTATTTT
CCGCCATCGCCGCTCTTCCACCTCCATTCAAATTCCTCACCGCAACAAACCCTTAACACCCATTCTCCCATCTTTTCGTATTTTTTACTA
GTAACAATGAGGAAAGGAACAAAGCGAAAGGCTAAGGAAGTAGTAGGAAAAGGCAAGGCGAAAGTGGAGGAGGAAAAGCCAACCACCGAA
GAACAAGCCAAGAACAATGACAAAGTTGTTGTTAAGCGACAAGCTAAACGAGCTAAGATTGTTAAGCCTGAGACTGAGACTGAGTACTTC
CCTGATAAGCGTAATTTGGAAGATCTGTGGCAAGAGGTTTTTCCTGTTGGCACAGAGTGGGATCAGATTGACATGGTTTATCAATACAAA
TGGAATTTCTCAAATCTTGAAGATGCATTTGAAGAAGGTGGAGAATTGCATGGACAGAAAGTCTACCTTTTTGGTTGTACAGAACCACAA
TTGGTTTTTTTCCAGGGACAATCAAAAGTCACGTGTATACCTGTTGTGGTTGCTGTTGTATCTCCTTTTCCACCTTCTGATAAGATTGGA
ATAAACTCTGTACAAAGGGAAGCTGAAGAGATACTGCCAATGAAACAGATGAAAATGGACTGGGTTCCGTACATTCCTTTGGAAAAACGG
GAATCTCAAGTTGAAAGACTCAAATCCCAAATTTTTATTCTGAGGTGCACTCAGAGAAGGGCTGGTTTAAAACACTTGAAGTTGGAGCGA
GTTAAGAAGTTTGAGTATTGCTTACCTTATTTCTATCAGCCATTTGCAGAAGATGAATTTGAACAGAGCACCATTGTGCAGATCTTGTTC
CCATCAGAACCGCCTGTGTTTTGCGAGTTTGATTGGGAATTTGATGAGCCAGAGGAAATGGCAGACAAATTAATCGAGTCAGAGGAGTTG
CCGGCAGATAAAAAAGATGAATTTGTGGAATTTGTAAAGGAGAAGGTTAAAGAAGGAAAGAGGAGCAACCGAGAGGCGAGAGAAGCCAGG
AAAAAAGCTATACAGGAGATGAGTGAAGAAGCGAAGGCTGCATTTCAGAGTATGAAGTTTTACAAATATTATCCTGTGACCTCACCTGAT
GCTCCTGATGTATCTCAGGTCAAGTCCCCATTCATAAACAGATACTATGGAAAGGCTCACAAAGTTTTCTGAATGATGATGCATCAGAGT
GCATATTCAGAATGGGAAAATAAGTAACTGTGATCTGAAACCATGTACTTCTGGTAGCCTACTTCAGAGCTGAATGATGGAACCATATTG
TTCAGCTTAGCATGTGTTTTGCCGCAACCATTAGTTATAGGACTATTTGAGGATGTAGAAAGATCCGTAGAGGTGAAATGTATTTTTTTT
TCAATCCTATAGCTAGAGTATTCAGTCAAAATTTTGGCAATGGATTCTTGTCTTCATTACCTGGGAAATTTTAGTTTTATTTTGGATGCA
AATGTAATCCTTTTCTATCGTTAATTATCATGTTTACCCCTACAGACATCATGAGCTGCAATTAGCAGTTTGTTTTTAGTTCGACTTGAT
CAGATGAACTATGAATATTTTTGCTTCAAATGGAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	7
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2160	ATPsynt_DE YL1 HypB Vicilin_N	8
2	24362	ATPsynt_DE YL1 HypB Vicilin_N	8
5	58407	ATPsynt_DE YL1 HypB Vicilin_N	8
1.1	101392	Peptidase C48 SUMO/Sentrin/Ubl1 - Biological Process: proteolysis (GO:0006508) - Molecular Function: cysteine-type peptidase activity (GO:0008234)	341
2	121275		7
5	132062		6

Preceding Unigenes (1)

Unigene	Build
SGN-U244624	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer