Sol Genomics Network

Unigene SGN-U270444

Unigene Basic Information

Unigene ID:	SGN-U270444
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270444
mRNA sequence:	Length: 2424 bp

>SGN-U270444 Solanum tuberosum #4 (20 members)
CTCTCTCTCTCTCTTCTGTTTAGCAGTTGGTTAGATAGATTTGATGTTTCTTCTGGTTGCTGTTTCACTGGTTTGCTAAGGAAAAAGTGT
GTGAATCTTCTCACACTACAATACTATCTCAAACCCTCTTTGAGATTGTAAGCTTGGTATACTATAGCCCTAATGCAGGGGAAACAGAAT
ACCGTTGGTTCCCTCCAAGAAACTTTAGGCTTTAATCATGGTTCGACGCCTAGTGAAGGTGGTGTAGATCAGCAGATATGTTGGAATAAT
TTGCCAAATTCTGCACAGAATCACCTGCCAGATTATATGGTTTCTTCTAATGCGACTAATATTCCATTCTTCAATCCTATGAGCCAAGAG
AGACAGAATGTAACCAGGGGGAGTTTAGGAGAATCCAGCTCCTCTATTGCACCGAATTGTGCAAGTCTGAGTGAACAGAAAGCAGATCAT
GGATGGTCATCCGCAATGACTACGTATCATGGACCTTCACTGATCTGTAACGAACAGCAATGTGGGTCTTCTAACATTATGTCATTGAAT
GATTTTTTTTCTCAAGGTTCTAGTTCTAGCACCATTCCTCATGAAATCAACAGGAATCCAGCATTTGAGGGGTGCAGTGACAACGATGAC
GATGGCTGTCAAGTGATGGAGTGTACTCCATACAATTCTGTTAGACCAGGAAAAGAGCGAATGTCATCTGCTTGTACTTATTTAGGTAAT
GGGTGTTCGACGGATGATAGTGGTGATGGCAGGCCAGAAAGTTCACCGGATTCTAGGCGCTTTTGTAAGAGAAAAACACTTGAAGGATAT
CTAGCACAATCTTCAGGAAGTGGAAGTTCTGATTATATTCCTCTTGCTGAAAATAGCATATGGCATTCTGGACCTGCATCACATAGTATG
AGTACAGGTGCAAATATCTCTGCTCCAACAGAAAGTGTCAGAAGCATCAATATGTCAGAGCATGTGATCCCAAGACTTGGGCTTACCATG
GGAGGAGCCGCTGCGGTAACTCCTGTTGGTACTCTGGCTTCAAGAAGTGCAGAAAGTTCTCATAGAAATTTCAGGGTGAGGATTGATGGC
TCACTTCAGCAAGATTATCTTCCCAGTAATATCTTTCCTGATGTGGATAATGTTGGAAATGTTAATCGGTCATCTGAACAGCAATTACCA
GAGCTACTTCCTAATATCCCTTTGGATTTGAGGTCTGTGCCTGCTGCAGACAGTGGAAATACTCAAAGGCAGCCTGTTGTAATGCATGTT
TCTTCTCTGCATCGAGGTGCACAGACTAGGTGGAGTTCAGCATCAAGTTCCAGAACTGGCAGTTCATCAAGTTCTGCTCGAGAGAGAAAT
TCAGCAACATTTGAAGAGCCTAACTCAAGAAGTGTGTCAAGAAACATCTCACAACATCCTATGTTCATACCTTCAACTAATGGGAGAAAC
TTGAACCAAAATCCTGCCAGCTTGAATTTAGCTGGAAGAAATGTTTCTGTTGCTGGAAATGTCGCATCCAGTTCAGGGGTCCACACTTCT
TCTCCTAATAGGGTTCTCCACAGATCTCCTCAATATCACCGGAGGCTGTCAGAATTAGTCCGTAGATCTTTGTTGTCTCCAGCTAGCACT
GGATCTGGAGGTGTTAATGGTAATAGTCGTCCACTACGTTTGAGTTCTCCTATCTCACAGGAGATGGCACTTCCTGGAAACCATGAGCAT
CGTACATCGAGTGCAGTGGAGCGACATCCTGATGATGCTATAGGACTCTCCAATTCCTCGAGGACTTTGGCTGCTGCACGGGAAGGAAGA
AGTAGGCTAGTCACTGAGATTCGCCATGTGTTAGATCTTATGCGCAGGGGGGAAGGGCTAAGTGTTGAGGATGTTATGATCCTTGATCAG
TCGGTCTTCTTTGGGATGCCGGATATTCGAGATCGCCACAGGGATATGCGTCTTGATGTTGATAATATGTCATATGAGGAGTTATTGGCA
CTCGGAGAGCGCATTGGGGATGTTTGCACCGGGCTGAGTGAGGAAACTATTTCAAGTCGTTTGAAGCAGCGCAACTTTATTAGCATAAAA
ACAGAACAACCCGAGGAAGCAGAACCATGCTGCATATGCCGGGAGGAATATAACAACGGAGATGGTCTTGGAACACTAGAGTGTGGACAT
GATTTCCATACAGACTGCATTAAACAATGGCTCATGCAGAAGAATTTATGCCCGGTATGCAAGACGACGGGGCTTACTACATGAGAAAGA
ACCATATTCTTTGAAAATATTTGAATTGGAAGGGGAGTTTGTTCTAGAGATGAAATTAGCTCTAGCTGCATTAGACATTTATTTAGAACA
AAATTTACATTATGGTTTTCTGGAATTTTACATTTGCTTTTACAATTAATTGAATCACCTTTTGGAATAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	10	Znf_ring	594
2	22111	Znf_ring	64
5	56871	Znf_PHD Znf_ring	21
1.1	101372	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	566
2	118581	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	49
5	129527	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U245147	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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