Sol Genomics Network

Unigene SGN-U270892

Unigene Basic Information

Unigene ID:	SGN-U270892
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270892
mRNA sequence:	Length: 1215 bp

>SGN-U270892 Solanum tuberosum #4 (12 members)
CTCAACATACGAACCTGAAACGAGTGACATATCTTGTATTGGACGAGGCTGATCGAATGCTGGATATGGGGTTTGAGCCTCAAATAAGGA
AACTAATTTCCCAGATTAGACCAGATAGACAAACCTTGTATTGGAGTGCCACTTGGCCCAAGGAGGTTGAAGCACTGGCTAGGCAGTTTT
TACGTAATCCCTACAAAGTCATCATTGGGTCTCCAGAATTGAAAGCAAATCAATCTATAAGGCAAGTCATTGAAGTTGTCACAGATTTAG
AGAAATATAGCAGGTTGATTGGGCTTTTGAAAGAAGTGATGGATGGAAGTCGAATCCTAATATTTGTAGAAACAAAGAAAGGATGTGATC
AAGTCACAAGACAATTGAGAATGGATGGATGGCCAGCTTTATCCATCCATGGTGATAAAAGCCAGGATGAGAGGGATTGGGTCCTTGCTG
ATTTCAAAACTGGAAGAAGTCCCATAATGATTGCCACTGATGTTGCTGCACGTGGTCTTGATGTTAAGGACATAAAGTGTGTTATCAACT
ATGATTTCCCTTCAAGTCTCGAGGATTATATTCATAGGATTGGCAGAACTGGACGTGCTGGTGCAACAGGAACTGCCTATACATTTTTCA
CTCACGCAAATGCCAAGTTTACCAGAGAGCTTATCAAGATCCTGCAGCAGGCAGGACAAATCGTTCCTCCTCAACTTTCTGCATTAGCAA
GGTCTAGTGGTCCTAGCACTGGAGGAAGCAATTTCAGGTCTAGAGGACGAGGTGGCTTTGGGAACCGGGGACAGAGATCTGGGTCTAATG
TAATTCCTATTGGCGGTTCAAGAAGGCCTTGGTAGTTACTGAATCTAGTATAGGAAATGTATACTAGACATAATTTTGGGATTTCTCTAT
GCTTTTTGCCTACAGTTGAAGCATATAGATTTTAGTTAAACTCATCTCTTTCCTTTCTAGTCTTGGTCGAGTTGGTTCATTATATGGCCA
GTTATTAGGAATTTGGATATGCAGATGGAGATAACATAGTTTGTGCAGGAATAGAATATTATGCTGTCTGGTGCTATATTTATACCCTTT
TAAATTTAAATTCATTATGTTGTTTTGAGTAACTTTTTACATTGAGCATCAGTGTGGTGATGCATTCGACAGTACTCGTTATTTAGCTGT
TTAATTGACGCCTACTTGGCCAAAGGAATTTGTCAAAACAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	21985	Helicase_C DEAD	273
5	56284	Helicase_C DEAD	133
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	128963	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	106

Preceding Unigenes (1)

Unigene	Build
SGN-U245213	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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