Sol Genomics Network

Unigene SGN-U270980

Unigene Basic Information

Unigene ID:	SGN-U270980
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270980
mRNA sequence:	Length: 1631 bp

>SGN-U270980 Solanum tuberosum #4 (9 members)
GGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGATTGCTTCTCGCATTTGGGTGAGAATGATAAGCCTCAAGT
AAAGCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATGCAAAAGCTGCTTCCGATGGTGC
AGATATTCTTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTGGTTCAATAAATCTGATAGACACGACGACGGTGGC
CCAATCGCCATTCAGCGACATCGCTACCACTGTTCCAGAGCTTCAGATAACAAATGGAATACTCACCATCAACCTTAGCTGGAGCGATAT
TCAAACGCTGAAACCGGCAATATCAACCCGGTATTCAGACTTTAGATTGTTACGGAATCCAAAGGCCAGAAATGATGGAAACTTTATGTC
GTTAGCAGATTTCTTGACATTTTCCAAAAATGCTAATGTTTCTGGTGTAATTATCAGCATAGAGAATGCCCCATACCTGGCAAAGCAGGG
ATTTGGTGTAACTGATGCTGTTTCGGACGCCTTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGA
CAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATGATATCAGTGATATTAAGAACTCAACTTT
ATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGATGCTTTTATCATTGGTCAAACGAA
TGTTGTGCAGAAGCTGCAGTCAGCAAATCTCCCCGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTC
AGATTCGTCTGCTGAGTTAAACAACTATGTTCTTGGAGCTGGAGTTGATGGTCTTGTTACAGAATACCCTGGCACAGCGGCTAGATACCG
AAGGAACCGTTGTTTAGCATACAAAGACTTGCCATCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTC
TATGCCACCAGTCGAACCTCCCAACCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCTCTTCCACCTGTTGCAAAGATAAACCCAAG
TAATGACAATGGTTCTACAGCTAGACCTCCCACTACTGCTCCAAATGGCCAATCCTCAATTGTTGCTAGCATTCTCATGAGCTCAGTCGC
AGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTGCCTTGGTGCCACCATTTTGTACAATTTGTTTTACCATCTTGCTGATC
AAACCTCTCTCTGGTGATTATGGAATCGCACATGATGGCGGCAGTAGTCTCGGGTCAGCTCATTTAACACGTGATTGTTTCCTTGTATTT
GCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATCCCTCTTTTTCCATTTTGGGTCTGAT
TGAGTGGGTGTCTGGGGTTTATTGCCTATTCATTTGTAAGAAATCTGTATTGGATATAAGCAATGATCAATGTAGTTAGTATTTTTCATA
CAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	540	GDPD	33
2	22492	GDPD	27
5	56887	GDPD	20
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118930	Glycerophosphoryl diester phosphodiesterase - Biological Process: glycerol metabolism (GO:0006071) - Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889)	25
5	129592	Glycerophosphoryl diester phosphodiesterase - Biological Process: glycerol metabolism (GO:0006071) - Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U245250	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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