Sol Genomics Network

Unigene SGN-U270992

Unigene Basic Information

Unigene ID:	SGN-U270992
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270992
mRNA sequence:	Length: 1874 bp

>SGN-U270992 Solanum tuberosum #4 (16 members)
CGGCACGAGGAAGCTGATCACACTCCCCTTTGTATGTCCACTCAACAACACAACTTCTTGTGATTCACTTTCAATTCTAGATCTCCTTAA
AACTTTTTCTGAATTACTTTTCAAGATTCTTGATTCTGCACCACTAGCAATTTCCATTTTTCTTTCAGTGATTTTGGTTACTTATTTGAC
ATTCTTGTTTTCAAGATCCAACCTCATCACTTTCCAGAAATGGATACTTGTTGTGTGCCTATGAAATCGACGGTCCATTTGGGGAGAGTG
AGCACTGGTGGCTTTAACAATGGAGAGAAGGAGTTTTTCGGGGAGAAGATCAGAGGGAGTTTGAACAGCAATCTCAGGATTAATCAGTTG
TCGAAAAGTTTGAAACTTGAGAAGAAGGAGAACAAGATCAAACCTGGGGTTGCTTACTCTGTGATCACTACTGAAAATGACACACAGACT
GTGTTCGTAGATATGCCACGTCTTGAGAGACGCCGGGCAAATCCAAAGGATGTGGCTGCAGTCATACTGGGAGGAGGAGAAGGGACCAAG
TTATTCCCACTTACAAGTAGAACTGCAACCCCTGCTGTTCCGGTTGGAGGATGCTACAGGCTAATAGACATCCCAATGAGCAACTGTATC
AACAGTGCTATTAACAAGATTTTTGTGCTGACACAGTACAATTCTGCTCCCCTGAATCGTCACATTGCTCGAACATATTTTGGCAATGGT
GTGAGCTTTGGAGATGGATTTGTCGAGGTACTAGCTGCAACTCAGACACCCGGGGAAGCAGGAAAAAAATGGTTTCAAGGAACAGCAGAT
GCTGTTAGAAAATTTATATGGGTTTTTGAGGACGCTAAGAACAAGAATATTGAAAATATCGTTGTACTATCTGGGGATCATCTTTATAGG
ATGGATTATATGGAGTTGGTGCAGAACCATATTGACAGGAATGCTGATATTACTCTTTCATGTGCACCAGCTGAGGACAGCCGAGCATCA
GATTTTGGGCTGGTCAAGATTGACAGCAGAGGCAGAGTAGTCCAGTTTGCTGAAAAACCAAAAGGTTTTGATCTTAAAGCAATGCAAGTA
GATACTACTCTTGTTGGATTATCTCCACAAGATGCGAAGAAATCCCCCTATATTGCTTCAATGGGAGTTTATGTATTCAAGACAGATGTA
TTGTTGAAGCTCTTGAAATGGAGCTATCCCACTTCTAATGATTTTGGCTCTGAAATTATACCAGCAGCTATTGACGATTACAATGTCCAA
GCATACATTTTCAAAGACTATTGGGAGGACATTGGAACAATTAAATCTTTTTATAATGCTAGCTTGGCACTCACACAAGAGTTTCCAGCG
TTCCAATTTTACGATCCAAAAACACCTTTTTACACATCTCCTAGGTTCCTTCCACCAACCAAGATAGACAATTGCAAGATTAAGGATGCC
ATAATCTCTCATGGATGTTTCTTGCGAGATTGTTCTGTGGAACACTCCATAGTGGGTGAAAGATCGCGCTTAGATTGTGGTGTTGAACTG
AAGGATACTTTCATGATGGGAGCAGACTACTACCAAACAGAATCTGAGATTGCCTCCCTGTTAGCAGAGGGGAAAGTACCGATTGGAATT
GGGGAAAATACAAAAATAAGGAAATGTATCATTGACAAGAACGCAAAGATAGGAAAGAATGTTTCAATCATAAATAAAGACGGTGTTCAA
GAGGCAGACCGACCAGAGGAAGGATTCTACATACGATCAGGGGATAATCATTATATTAGAGAAAGCCACAATTAGAGATGGAACAGTCAT
ATGAACTAGGGAAGCACCTCTTGTTGAACTACTGCGAGATCCAAATCTCAACTTGAAGAAGTCAAGGTGATCCT

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
X61187	ADP-glucose pyrophosphorylase large subunit	ADP-glucose pyrophosphorylase
X75017	ADP-glucose pyrophosphorylase (EC2.7.7.27)	ADP-glucose pyrophosphorylase
agps2	ADP-glucose pyrophosphorylase s2	ADP-glucose pyrophosphorylase

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	748	G1P_thy_trans_s NTP_transferase Hexapep_transf GlmU ADP_Glu_pyroP	25
2	22584	G1P_thy_trans_s NTP_transferase Hexapep_transf GlmU ADP_Glu_pyroP	24
5	56801	G1P_thy_trans_s NTP_transferase Hexapep_transf GlmU ADP_Glu_pyroP	22
1.1	101573	Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978) Trimeric LpxA-like	70
2	119093	Trimeric LpxA-like Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978)	20
5	129502	Trimeric LpxA-like Nucleotidyl transferase - Biological Process: biosynthesis (GO:0009058) - Molecular Function: nucleotidyltransferase activity (GO:0016779) ADP-glucose pyrophosphorylase - Biological Process: glycogen biosynthesis (GO:0005978)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U245926	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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