Sol Genomics Network

Unigene SGN-U271007

Unigene Basic Information

Unigene ID:	SGN-U271007
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271007
mRNA sequence:	Length: 1504 bp

>SGN-U271007 Solanum tuberosum #4 (16 members)
TACGCAAAATATCTACTACTACTACTACTACTACTACTACTACTTCCATTATAATCTTCGCAATGCAGTTATCGTCTTCGCATTAAAATG
ATTGATAACGTTAAAGGTTTGCCGCCGGTAGCCGAAAAAGGTTGCCGGTTAACGGCGTTAGTGGATTCCGGCGGACTAGCAGAAGTAGAT
CTGAGTGAGAAGGAGCCAAATTTCACTCGTCGTAGGCGATTGAATGAACGTCGGTTGAAATCGTCGCCTGACCTACCGGAAAATTTCAAT
GTCTTCGCCGCTGATTACAGGCATTATAAGAAGAAAAAACCGGAAAACAGTACCGTAACTGATACTGATGATCAAGTTCAACTAGCGACA
TCTAGTGAAGTGAAAAAAGTAAGGGAGAGCTTGGTCACGTGCTGTTCACATGGATCGATATCGTTGATCGGCCGGAGAAGGGAAATGGAA
GATGCGGTGGCGATTTATCCGAGTTTTTTCAGTGAAGGCAGCAGCAGGAAGTACGATTATTTTGGTGTTTACGACGGGCATGGAGGGTCA
CGTGTAGCGCACGCGTGCCGTGACTTTTTGCACCGTTTAGTGATACAGCAAGTTTCGGAAGGAGAAGATTATGATGGGAAGAGTATTAAT
TGGGAGAATGTTATGATGGAGAGTTTCCGTAAAATGGACGAAAAGGTGAACAAGGAAGGGGCGGAGATGGCGACGATAGGATCAACGGCC
GTTGTAGCGGTGGTCGGAGAGGAGGAATTTGTTGTTGCGAACTGTGGAGATTCAAGAGCTGTGCTTTCACGTGCTGGAGTTGCAGTACCT
TTGTCTATTGATCATAAGCCTGACAGACCTGATGAGCTGGATAGAATTGAAAATTCAGGTGGGAAAGTCATAAATTGGAATGGACAAAGA
GTCTTAGGAGTTCTTGCTACTTCAAGATCCATAGGTGATATGTACCTCAAACCATATGTCATTCCAGATCCTGAAGTCTTAGTTAGCCAA
AGAAGTGATGAAGATGAATTCTTATTACTTGCAAGTGATGGTCTATGGGATGTCATTCCAAATGATGTTGCGTGTGACGTTACAAGAAGA
TGCTTGAATGGTCAAACGTTCAGGAGGTGTGACCAACAAACCAAATCCCATAAGAGAGATGATCAGTCAAGTGAAGGTGTCAAAGAAAGT
CTCGCAGCACGAGCAGCTTCCTTCCTTGCAGAGTTGGCAATTGCTCGGGGTAGTAGGGATAACATCAGTGTAATTGTCGTCGATTTGAAT
AGATCTGTATGTTCATCCACTGACTGAGCATAGTTAAGCTTCCCATACAAATGATAGGCAAACAATTTTATGGATGTCCACCAGGTTAGC
AATGTGAAGGGATCTTTCCTTTTGATTGCCTGCAGCAATACCATTACTTGCCTTCCTTGCTTGTTTGCGTAATTCTCCCCTTTTCTTTGT
AAAGCTTATGGTTTATTTATAGACTATTATTGGCCTTGGTCAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	22	PP2C-like	349
2	21995	PP2C-like	211
5	56646	PP2C-like	27
1.1	101395	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	322
2	118451	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	125
5	129794	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824) Protein phosphatase 2C - Molecular Function: protein serine/threonine phosphatase activity (GO:0004722) - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Cellular Component: protein serine/threonine phosphatase complex (GO:0008287)	15

Preceding Unigenes (1)

Unigene	Build
SGN-U247148	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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