Sol Genomics Network

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Unigene SGN-U271123

Unigene Basic Information

Unigene ID:	SGN-U271123
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271123
mRNA sequence:	Length: 1545 bp

>SGN-U271123 Solanum tuberosum #4 (9 members)
ATTCAAACACCAAAAGTATTTGCTAAGCGCACATGTATTGTCTTCCGTCCCCTATATAATATAAGAATAAGAGAGTCGTAGCTCTCCGAA
CCGAACATTATTATGGGTTTGAAGCATGACTTGGTGGTGTACACAAGACTAGAGTGTGAAAGCTGTGAGGAAATGGCAGCTTCTATGCAC
AAAGCTAAAGAAGAAGGAGCAGATCTGGTGGAGCTTTGCATTGATGACTTCACTTTCTCTGACATTTCACAACTTGAACTACTACTCAAA
CAAAGAAGTTTACCATCCATCGTTTCTTTCAGGCCAAACTCTGCGATAAATTCTGACTGGAAGAAAACATGTATCCAAGTTCTCAAATTA
GCTGTTGAATTGGACGTTGAGTTCGTCGAAGTCGACACTGAGGTTGTTTCCCATCAAGTGGTTGCTGAATTGATGAGCAGCCGATCAAAT
AGCAAGATAATTGCTTCTACTTATGTCATTAATGCTGGAAACCCTCCTACTAAAGACACACTTTGTAATTCCATCATAAACCTGCAGTCC
ACAGGAGCAGATATCATCAAACTTGTCATTGATGTAGCTTATATTACAGATGTTGCACCAGTTTTCCATATGCTTACACATTCTCAGCTC
CCTCTAATTGCTAGGGCAGCAGGGGATAGAGGTCTTATAAGCCAACTATTGGGTCCAAAATACGGTGCTTTCTTTGTTTGTGGATCTTTG
GCAGGCAAATCCACCCCTGGCTTGCCTCCTTTGACCAGCATTAAACAGGTTTATAAACTCCAATATGTCAACCCAGATACTAGAGTTTTT
GGTGTAATCTCAAATCCTGTTGGCCATAGCAAGGGCCCCCTTCTGCACAACCCTGCCTTTAGGCATACAGGATACAATGGAATATATGTC
CCACTACTAGTTGACAATGTCAAGGAATTTTTTCGCGTTTTCTCATGTAATGACTATGCTGGTTTCAGGTACGCTACCTCCTTCTGCACT
TAGTTTTGTTTTTCTAAAATTATATTTGCTTCATGTAGAAAACTATCTAACGCAGAATCTTCTTCCTTTTGATGGAACCTCTAGTGTTGG
TATCCCACATAAGGAAGCAGCAGTACGCTGCTGTGATGAAGTTGATCCACTTGCTAAGGTTTGATTAGCTCCATAACATACCATGTTTGA
TGAGTGCATATGTTGTGTAACTTACCTTCGGGTTTTGGGAGTTAAAGAACCTGAAAAAGCACAAACTTTTCGGAACGTCTTTGCTGAAGC
TAGTTCAGCATCAATACTTCTTATATAATGACAACTATGTTTATATAGTGGCAGGCCGCCTGCATATACACATAGGAAACGAAAGCTTAC
CTTCTTTATGTGCTTGAATCACCCTAGATTATTAGGCACAATATTATCAGTTTTATTTTCCATAAATCGACTAATGAATAACTAGCCTTA
GTCCACCACGGTTCAATGTTGAAGGAAGCCTAAGTAGAGATATTACCCTGGTTGGGTAATAAATAGGTCTAGCAGCATCAACTTATGAAA
AGAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1205	GlutR GidA_sub DHquinase_I Shikimate_DH NAD_BS TrkA_N Shikimate Moxy_FAD_binding	16
2	23083	GlutR GidA_sub DHquinase_I Shikimate_DH NAD_BS TrkA_N Shikimate Moxy_FAD_binding	16
5	61109		4
1.1	102401	Shikimate/quinate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) Quinate/Shikimate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) - Molecular Function: NADP binding (GO:0050661) NAD-binding site Dehydroquinase class I - Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Shikimate dehydrogenase substrate binding N-terminal	15
2	119505	Dehydroquinase class I - Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Shikimate/quinate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) NAD-binding site Quinate/Shikimate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) - Molecular Function: NADP binding (GO:0050661) Shikimate dehydrogenase substrate binding N-terminal	15
5	138296		2

Preceding Unigenes (1)

Unigene	Build
SGN-U245482	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
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Event Web URL:

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