Sol Genomics Network

Unigene SGN-U271221

Unigene Basic Information

Unigene ID:	SGN-U271221
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271221
mRNA sequence:	Length: 743 bp

>SGN-U271221 Solanum tuberosum #4 (5 members)
TCGCCTTTCAGTTGTTGCCGATCGCAAGGAAGAAGCCTATTTGCATCTCCAATGGCTGCCATCTTAGCTCGCAAATCTCTATCTGCTTTA
CGTTCTCGTCAGCTTGTTTTGGCAGGACACACAATTGAAGGAACTAATGGCTACAACAGAACTCTGCTTGGCACCCGATCATTTGCTACC
AAGCATTCGTTTTCTACTGACAAAGATGATGAAGAAAGAGAGCAGCTAGCAAAGGAGTTATCAAAAGATTGGAATTCAGTTTTTGAGCGA
AGCATCAATACATTATTTTTGACTGAAATGGTTCGAGGTCTAATGCTGACGCTGAAGTACTTCTTTGAGAAGAAAGTAACGATTAACTAT
CCATTTGAGAAGGGTCCTTTAAGTCCTCGTTTTCGTGGAGAACATGCTCTTCGACGTTATGCAACTGGAGAGGAAAGATGCATTGCATGT
AAACTTTGTGAAGCTATTTGCCCTGCCCAAGCCATCACCATCGAGGCCGAGGAGCGAGAGGATGGAAGTCGTCGCACAACTAGGTATGAT
ATTGACATGACAAAATGCATTTACTGTGGATTCTGCCAAGAAGCCTGCCCTGTTGATGCAATCGTTGAAGGGCCCAACTTTGAATTTGCA
ACCGAAACTCATGAGGAACTTCTTTACGACAAGGAGAAGCTTCTTGAGAATGGTGATCGATGGGAAACTGAGATTGCCGAGAATCTGAGA
TCCGAAAGCCTCTACCGCTGAGT

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
tyky2	NADH:ubiquinone oxidoreductase	NADH:ubiquinone oxidoreductase
tyky1	NADH ubiquinone oxidoreductase	NADH ubiquinone oxidoreductase

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (5)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	124	RuBisCO_small	107
2	23509	NdhI 4Fe4S_ferredoxin NapF	12
5	57745	NdhI 4Fe4S_ferredoxin NapF	11
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	119919	4Fe-4S ferredoxin iron-sulfur binding - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) NADH-quinone oxidoreductase chain I - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity acting on NADH or NADPH (GO:0016651)	11
5	130372	4Fe-4S ferredoxin iron-sulfur binding - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) Alpha-helical ferredoxin NADH-quinone oxidoreductase chain I - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity acting on NADH or NADPH (GO:0016651)	10

Preceding Unigenes (1)

Unigene	Build
SGN-U245722	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer