Sol Genomics Network

Unigene SGN-U271284

Unigene Basic Information

Unigene ID:	SGN-U271284
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271284
mRNA sequence:	Length: 1362 bp

>SGN-U271284 Solanum tuberosum #4 (15 members)
AGTGGTAACAACGCAGAGTACGCGGGGAGTCACAGTAGATTTCATTTCTTGTCTTTTGTCAAATCCTAGAATTAACCTGATAATATGGCG
GGGGAAAAGATTGGAATTGCCAAGGATGTAACTGAATTGATTGGTAACACTCCTTTGGTATACCTGAATAATGTTGTGGATGGGTGTGTT
GCACGTGTTGCTGCCAAGCTGGAAAGCATGGAGCCATGCTCTAGTGTTAAGGATAGGATCGGTTATAGTATGATTACAGATGCTGAGGAG
AAGGGTCTCATCAAACCCGGCGAGAGTGTCCTCATCGAACCTACGAGTGGAAACACTGGTGTAGGATTGGCATTCATGGCTGCTGCTAAA
GGCTACAAACTCATCATTACGATGCCTTCTTCAATGAGTCTTGAGAGAAGAATTATTCTGCGTGCTTTCGGTGCTGAGTTGGTGCTTACC
GATCCAGCAAAAGGGATGAAGGGTGCTATTTCAAAGGCTGAAGAGATAAAGGCCAAAACACCCAACTCCTATATTCTTCAGCAATTTGAA
AACCCTGCTAACCCAAAGATACACTATGAGACCACTGGTCCTGAGATCTGGAAAGGCTCAAATGGGAAAGTGGATGCTCTAGTCTCTGGA
ATTGGAACAGGAGGCACGATAACTGGTTCAGGCAAGTATTTGAGAGAGCAGAACCCCAACGTTAAGCTGTATGGCGTGGAACCAGTTGAA
AGTGCTATCCTTTCTGGTGGAAAGCCTGGTCCACATAAGATTCAGGGGATTGGTGCTGGTTTCATTCCTGGTGTTTTGGAAGTTAACCTT
ATTGATGATGTAGTTCAGGTTTCAAGTGAAGAATCCATAGAAATGGCTAAGCTTCTGGCATTGAAGGAAGGATTGCTAGTGGGAATTTCA
TCTGGTGCTGCTGCGGCGGCGGCAATTAAAGTTGCTAAGCGCCCTGAAAATGCTGGGAAGCTCATTGTTGTTATTTTCCCAAGCTTTGGA
GAGCGATATCTTTCCTCTGTACTCTTCGAAACTGTCAGACGAGAAGCAGAGAACATGACTGTGGAGCCTTGAACTTTTTGCCCTTCGATT
ACCACATCATAGTCGCGAAGTGGGCTTCCGATGAAAGCAGAATGTTCTTGTCTGAACCTTCCCCTTTCTATTTTGCTGAAACTGCTAGAA
AATAAGGCCTTTTCTTTCTTTTATTGGCTATGTACTTTAAAGTAAAGAAACCATTCAAGTATATTTTAGTGCTTTTGTAATTCTACTGTA
AGAACAACTTAATGATATTTAGTGCTTTGTAACTCTATGTTTCTACAACATTTGAAATTTAAAGAGGTGTTGCTTCTTGTTAAAAAAAAA
AAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
pcs1	AB029511 cytosolic cysteine synthase	cysteine synthase
AF044172	AF044172 cysteine synthase	cysteine synthase

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	199	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthK	74
2	22155	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthase_BS Cys_synthK	52
5	56417	Cysta_beta_synth Cys_synthM B6_enzyme_beta Cys_synthKM Cys_synthase_BS Cys_synthK	45
1.1	101578	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	70
2	118619	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	43
5	129130	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	38

Preceding Unigenes (1)

Unigene	Build
SGN-U246147	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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