Sol Genomics Network

Unigene SGN-U271289

Unigene Basic Information

Unigene ID:	SGN-U271289
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271289
mRNA sequence:	Length: 2674 bp

>SGN-U271289 Solanum tuberosum #4 (15 members)
TTTTCCTTAAGAGCCAAGAAAATGACTAAAGATTTCTAAAAAAAAAATTGATTTAAATTCATACCGTTGATCTTTTCTTGTTCAAGAATC
TTGAACAAGAATGGCAGGGAGGTATGGTTCTTCCGGCGGAGTTGCATCGACGACGATGAACGTAACTAATACGCCGGCGAAAGATCTTGC
TTACACCAATTGTGGATATTGTTCTCCCACAGATCTCAGAAATTTTCTTGTTCCGGGATCTAAGTTCGCTTATGCACTCATCGCTGATGC
TTTTGTTCTCACTCTTGCTGCCCACGACGCCATTCCTAATGGTCAACTTGGTCTTAATGCGATTCAAAGACGTTATGCCAAAGTTTCCAC
TGGAGACGCTATATCTGTTAGCAGATTTGTTCCACCTGAGGACTTCAACCTTGCTTTACTTACCCTTGACTTGGAGTTTGTGAAAAAAGG
GACCAAAGAGGAGCAGGTGGATGCAGTTTCTTTGGCTAATCAAGTTCGCAAGAGATTTGCCAAGCAGATTATGACAACTGGGCAAAAGGT
GACATTAGAGTATCATGGCAATGGTTATATAGTCACTGTGAATCAAGCTACTGTGGAGGGGCAAGAAAAATCTAATGTTGAAAGAGGGAT
GGTTTCAGCTGACACATACATTATATTTGAAGCCGCAAACTCCAGTGGAATAAAGATTGTCAACCAGCGTGAAGCTGCTAGCAGCAGCAT
CTTTAGGCAGAAAGAATTCAATCTTGAATCATTGGGTATAGGTGGTCTGGGTGCAGAGTTTTCTGATATTTTTCGAAGAGCTTTTGCTTC
CAGGGTTTTCCCTCCCCATGTGACGAGCAAGCTTGGTATCAAGCATGTTAAGGGAATGCTTCTCCATGGACCTCCTGGTACAGGGAAGAC
TCTAATGGCTCGGCAGATTGGCAAAATGCTAAATGGCAAGGAACCTAAGATTGTCAATGGACCTGAAGTGTTAAGCAAGTTTGTCGGTGA
AACTGAAAAAAATGTGAGGGATTTGTTTGCTGATGCTGAGCAAGACCAAAAAACCAAAGGTGACCAAAGTGAACTGCATGTTATCATTTT
TGATGAGATTGATGCAATCTGTAAGTCTAAGGATCAACTAAGATGGAACTGGTGTGCATGATAGCATTGTTAACCAGCTCCTAACCAAGA
TAGATGGGGTGGAATCTCTGAATAATGTTTTGCTCATTGGAATGACAAACAGGAAAGATCTGCTTGATGAAGCACTTATGAGGCCAGGAC
GATTAGAAGTCCAAGTGGAGATAAGCCTTCCTGATGAAAATGGTCGACTACAAATTCTCCAGATTCATACAAATAAGATGAAAGAGAATT
CCTTTCTTTCTCCTGATGTGAACTTGCAAGAACTTGCTGCACGGGACAAAAAATTATAGTGGTGCGTGAGCTTGAAGGTGTAGTCAAAAG
TGCAGTATCCTATGCATTGAACAGGCAACTAAGCATGGATGATCTTACCAAACCAGTGGATGAGGAGAGTATAAAAGTCACTATGGATGA
CTTTTTGCATGCTATTAATGAAGTAAGACCTGCATTTGGTGCTTCCACTGATGACCTTGAACGGTGCAGACTTAATGGCATTGTGGATTG
TGGTGAACGACATCAACACATTTACAGAAGAACTATGCTACTGGCAGAACAAGTTAAAGTCAGCAGGGGGAGCCCCCTTATTACATGTCT
TCTGGAAGGCCCAAGTGGAAGTGGCAAGACTGCAATGGCAGCAACAGTGGGAATTGAAAGTGATTTTCCCTATGTCAAGATAATTTCTGC
TGAAACTATGATTGGGCTCAGTGAAAGCAGCAAATGTTCTCAGATAGTCAAGGTATTTGAGGATGCATACAAGTCACCACTTAGTATAGT
TGTCCTTGATGGGATTGAAAGACTTCTGGAATATGTTCCAATTGGCCCTCGATTTTCAAATTTGATTTCTCAAACGCTGATGGTGCTCCT
TAAACGGCTTCCTCCTAAGGGTAAAAAGATTCTTGTGATTGGAACTACTAGTGAATCCGGTTTCTTGGACTCAGTTGGCCTTTGTGATGC
CTTCTCAGTCACATACCATGTTCCAACACTAAAGACAGAAGATGCCAAGAAGGTGTTGCAACAACTTGATGTCTTTGCAAGCGATGATGT
TGATTCTGCTGCTGAGGCCTTAAATGATATGCCCATCAAGAAACTATACATGGTTGTTGAAATGGCTGCTCAGGGTGAACATGGTGGGAC
AGCAGAAGCCATCTATTCTGGGAAAGAAAAGATCAATATTGCACATTTCTATGATTGCCTTCAAGATATTGTTCGATATTGAGTTTGTGG
TCTCGAGTAATTTAAGTAGGAACCGTGGTTTTCCTTTACATCTTACACACCCGTTGATGGGGTTCTTCTATTCACGAGTTATTCAGAGGT
ATTTATTGGTGAGTATTTGTTAGAGCTCATTCAAAACTTACATTCGCTTTCTAATATTTGCTACTCTCCTTTTCTTTTCCTTTTGGTGTG
CCAGTGTATTGTAATCTCTGTTGAGTTGAACATTGCACCTAATACGAATATTTTCCTGGTAAAGCAATTGATACTCTGCTTGTACATCGG
TTGAACATGTATGGAGAAGCATTCGATGCACAAATAGTGCTGTTTATGTTTTAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	21987	26S_p45 AAA_ATPase_centr	260
5	59427	26S_p45 ClpX Cdc48_2 NACHT_NTPase AAA_sub ATPaseVAT_N Pox_C4_C10 AAA_ATPase_centr Pept_M41_FtsH	6
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	133774	AAA ATPase VAT N-terminal - Molecular Function: ATP binding (GO:0005524) AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA-protein subdomain - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111) Aspartate decarboxylase-like fold	4

Preceding Unigenes (1)

Unigene	Build
SGN-U246257	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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