Sol Genomics Network

Unigene SGN-U271397

Unigene Basic Information

Unigene ID:	SGN-U271397
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271397
mRNA sequence:	Length: 1500 bp

>SGN-U271397 Solanum tuberosum #4 (12 members)
CACAATTTTCAACAAATTGTTCTCTGCATCTGCTCAAAAAAATTAAATAAATAAACAAAATAGTTGTAGAAATTCACCATAATTATAATT
ATGCCTTCGTTAGAGGAGGAATTGTTTCCGTCTACACCTGGAAAATTCAAGGACAGAAATCGACATTTTCATCGATGTTTTGCATCAACA
AGCACGATGTTTCTATGGGCATTGTTTTTAATAGCTTTAACAGCTTCATATTTGTGTTTTCAGTCGTTTATGGATTCCGGTAACCGGTAT
TTCACCACTACATGGGGCGGTCATCATTGGGAGAAAAATGTTATCAATTCTGCTCAGATCCGCCGTTCTCACGGCGGAATGTCGGTGTTG
GTTACCGGCGCAGCCGGTTTCGTCGGTTCCCACGTCTCCCTCGCCTTGAAAAAACGAGGCGACGGAGTTGTAGGAATTGATAATTTCAAC
AATTACTACGATCCGTCGTTGAAAAAAGCTCGGAAGAATCTACTCAATCAGAATTCAATTTTCATTGTTGATGGTGATATTAACGATTCG
AAATTGTTAGTTAAGCTGTTTGACATTGCTCGATTTACACATGTAATGCATCTGGCAGCTCAAGCTGGAGTTCGTTACGCCATGGAGAAT
CCAGGTTCGTACATTCACAGTAATATCGCCGGCCTGGTAACCCTGCTCGAAGTTTGTAAAAATTCGAACCCGCAACCCGCCATTGTTTGG
GCGAGCTCAAGTTCTGTTTACGGGTTGAATGAAAAAGTACCGTTTTCCGAATCGGATCGGACGGATCAACCCGCTTCGTTATATGCCGCT
ACAAAAAAAGCAGGTGAAGAAATTACACATACATATAACCATATTTACGGGTTATCGATAACCGGGTTAAGATTCTTCACTGTTTACGGA
CCGTGGGGAAGACCCGACATGGCGTATTTCAGCTTTACCCGTAACATATTGCAAGGGAAACCGATTACGGTTTATCGGGGCAAGAATCGG
GTTGATTTAGCCCGGGATTTTACCTACATTGATGATGTAGTAAAAGGTTGTATCGGGTCACTTAAAACTTCGGGTAAAAGAAATGGGTCG
GGTGGAAAAAAACGGGGACCCGCTCCGTATCGGAAATTTAATTTGGGTAAAACGTCTCCGGTGACAGTTCCAATAATGGTTGCGATGTTG
GAAAAGCATTTGAAGGTTAAAGCTAAAAAAAATTTTGTCGTAATGCCCGGAAACGGCGACGTTCCGTTTACTCATGCGAAAATAAGTTCG
GCCCGGAAAGAATTCGGGTATAAGCCCACAACCGATTTGCAAACCGGGTTGAAAAAGTTTGTTAAATGGTATCTCTCTTATTATGGCAAT
GATCAAGGAAAGTTGTAAATTGAAAATTAATTTTTTTTTTTTAAAAATCATGTTGTGGTTATTTAAGATTTTTTTTCTTTTTTTTAATCC
CAAAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	9	DnaJ_N	612
2	22275	dTDP_gluc_dehyt GDP_mann_dehyd ADH_short GalE Epimerase_Dh 3Beta_HSD Nuc_sugar_epim	38
5	56480	dTDP_gluc_dehyt GDP_mann_dehyd ADH_short GalE Epimerase_Dh 3Beta_HSD Nuc_sugar_epim	38
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118686	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287) Nucleotide sugar epimerase - Biological Process: carbohydrate metabolism (GO:0005975) - Molecular Function: racemase and epimerase activity acting on carbohydrates and derivatives (GO:0016857)	35
5	129150	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287) Nucleotide sugar epimerase - Biological Process: carbohydrate metabolism (GO:0005975) - Molecular Function: racemase and epimerase activity acting on carbohydrates and derivatives (GO:0016857)	35

Preceding Unigenes (1)

Unigene	Build
SGN-U245479	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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