Sol Genomics Network

Unigene SGN-U271417

Unigene Basic Information

Unigene ID:	SGN-U271417
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271417
mRNA sequence:	Length: 3157 bp

>SGN-U271417 Solanum tuberosum #4 (14 members)
GTGGATCCCCCGGGCTGCAGGCAAAATCTAAATACAAAGAGAGAAAAATCTCTTTTCTTTCTTCTTTCTTTTCTATTTTTCCTAAATTTT
CCCATTCATATATATATTTTTTAATTACTCAATTATCAATGGCGGCATCCGTTGAAAACAGGCAGTTCACTCACCTTGAACCGGGTTTAT
CAGGCGTAGGCCGTAATTTCAAGCCTAGGCCTGATTCCCCGGTTCGTGGTTGCAACTTCCCTCCGTCATCCAACCATGAACTCCCTTTCC
AAAAACAACAAAATCTCCCCATTTACCTTGATTACTCGTCTAGTGAAGACGAAGATGACGATGACGAAAAAAATGAATACGTTCAAATGA
TCAAAAAAGGTAAAACTGAATTAGAACCATCAATTCACGATACTAGAGACGAAGGTACCGCTGATAATTGGATCCAACGAAACTTTTCCT
TAATACGTCTCACCGGTAAACACCCATTCAACTCCGAACCCCCTTTGGCTCGACTTATGCATCACGGTTTCATCACCCCAGTCCCACTTC
ATTACGTCCGTAACCATGGCCCCGTTCCCAAAGCCTCCTGGGCTGACTGGAGCGTCGAAGTTACCGGGCTAGTAAAACGACCAATGAAAT
TCACAATGGATCAGCTGGTTAACGAATTTCCTTCACGTGAATTGCCTGTCACACTTGTATGTGCTGGCAATCGTCGGAAAGAGCAGAATA
TGGTTAAGCAGACAATTGGTTTCAACTGGGGTGCTGCTGCAGTTTCAACTACCGTATGGCGCGGAGTACCCCTCCGCCCCTTGTTGAAAC
GGTGCGGTGTTCATAGTAAGAAAAAAGGCGCGCTTAACATCTGTTTCGAAGGTTCAGATGTTTTACCTGGAGGTGGAGGTTCAAAGTACG
GAACGAGTATAAAGAAGGAATTCGCCATGGATCCATCTCGTGATATTATTGTAGCTTACATGCAAAACGGAGAAATGTTGAGCCCGGACC
ACGGGTTTCCGGTAAGGATGATTATTCCGGGATTCATAGGTGGAAGAATGGTGAAATGGTTAAAGAGGATTGTGGTCACTACACAAGAAT
CTGAAAGCTATTATCATTACAAGGATAATAGAGTCCTCCCTCCACATGTTGACGCTGAACTTGCTAACGCTGAAGCATGGTGGTACAAAC
CAGAGTACATCATCAATGAGCTCAACATCAACTCTGTCATTACAACTCCGTGCCATGAAGAAATTTTGCCTATCAATGCGTGGACTACTC
AGCGACCTTACACGTTGAGAGGCTATGCTTATTCTGGTGGAGGTAAAAAGGTGACTCGAGTGGAAGTGACTTTGGATGGAGGAGAGACAT
GGAGTGTGTGTACACTTGATCACCCAGAGAAGCCAACTAAGTATGGCAAGTACTGGTGTTGGTGCTTTTGGTCACTTGAGGTTGAGGTGC
TCGACTTGCTTAGTGCTAAAGAAATTGCTGTACGAGCTATCGATGAGACCCACAATACTCAACCCGAGAAGCTTATTTGGAACGTCATGG
GAATGATGAACAATTGTTGGTTTCGAGTGAAGATGAATGTGTGCAAGCCTCACAAGGGAGAGATTGGTATAGTGTTTGAGCACCCGACCC
AACCTGGAAACCAATCAGGTGGATGGATGGCAAAGGAGAGACACTTGGAGATATCAGCAGTGGCTCCTCCAACACTAAAGAAGAGTATTT
CAACTCCTTTCATGAACACAGCTTCGAAGATGTATTCCATGTCTGAGGTGAGGAAGCACAACTCTTCAGACTCTGCTTGGATCATAGTCC
ATGGACATATCTACGATGCCTCACGTTTCTTGAAAGACCATCCTGGTGGTGTTGACAGCATTCTCATCAATGCTGGAACTGATTGTACTG
AGGAATTTGATGCAATTCATTCTGATAAGGCTAAGAAGCTATTGGAGGACTTTAGGATTGGTGAACTCATAACTACTGGTTACACGTCTG
ATTCGTCTCCAAACACTTCTGTCCATGGATCCTCTTCCATTAGTAGCTTCTTAGCACCTATTAAGGAACTTGTTCAAACACCAACAAGGA
GTGTAGCCCTCATCCCAAGGGAAAAAATCCCTTGCAAACTCGTCGACAAGCAATCCATCTCCCATGATGTTAGAAAATTCAAATTTGCAT
TACCCTCTGAGGATCAAGTCTTAGGCTTACCTGTTGGCAAACACATTTTCCTCTGTGCCACAGTTGATGACAAACTCTGCATGCGTGCCT
ACACGCCTACTAGCACAGTCGATGAAGTAGGGTTCTTCGAGTTGGTTGTCAAAATCTACTTCAAAGGTGTTCACCCTAAATTCCCTAATG
GAGGTCAAATGTCACAACATCTTGATTCTCTCCCAATAGGTGCATTCCTCGACGTTAAAGGTCCATTAGGTCACATTGAATATCAAGGCA
AGGGTAATTTCTTAGTCCATGGTAAACAAAAGTTTGCCAAGAAGTTAGCTATGATAGCTGGTGGAACAGGTATAACTCCTGTATATCAAG
TAATGCAATCAATTTTGAAAGATCCAGAAGACGACACAGAAATGTATGTGGTGTATGCAAACAGAACAGAGGACGATATTTTGCTCAAAG
AGGAACTCGATGCATGGGCAGAGCAAATCCCAGATAGAGTTAAAGTTTGGTATGTCGTTCAAGAATCGATTACAGAAGGATGGAAGTATA
GTACAGGATTTGTTACAGAAGCAATTCTCAGAGAACATATACCTCAACCATCTCATACAACATTGGCATTGGCTTGTGGACCACCTCCTA
TGATACAATTTGCTATTAATCCAAACTTGGAGAAAATGGGATATGACATTAAGGAGGAATTATTGGTGTTCTAAATTGGATGATGATCAT
ATATTTCTGGTGGAATAAATTCCTTTTTGTTTTCATTTGTACATATTGTACTTCTTGTAGTTCTTACATTTTAATTACTCAACTTTAGGT
ATAAAATGTTGTACTCTCTACTAGTATGTGTATGTCAAAATTAAGTTGTAATATTCATCATGGAATTATAGTAACTTTATGGTGATATTC
CAAGTCTTGTTGTAAGAGATTTTTACCAAATCAATGTATATATATATATATATATATAGTAAATTGCAACAAAAAAAAAAAAAAAAAAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
nr2	NADH nitrate reductase	nitrate reductase

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	vSTmRNA		708	4

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P74411 (911 Aa)

MAASVENRQFTHLEPGLSGVGRNFKPRPDSPVRGCNFPPSSNHELPFQKQQNLPIYLDYSSSEDEDDDDEKNEYVQMIKKGKTELEPSIH
DTRDEGTADNWIQRNFSLIRLTGKHPFNSEPPLARLMHHGFITPVPLHYVRNHGPVPKASWADWSVEVTGLVKRPMKFTMDQLVNEFPSR
ELPVTLVCAGNRRKEQNMVKQTIGFNWGAAAVSTTVWRGVPPPPLVETVRCSSKKKGALNICFEGSDVLPGGGGSKYGTSIKKEFAMDPS
RDIIVAYMQNGEMLSPDHGFPVRMIIPGFIGGRMVKWLKRIVVTTQESESYYHYKDNRVLPPHVDAELANAEAWWYKPEYIINELNINSV
ITTPCHEEILPINAWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGETWSVCTLDHPEKPTKMASTGVGAFGXLEVEVLDLLSAKEIAVRA
IDETHNTQPEKLIWNVMGMMNNCWFRVKMNVCKPHKGEIGIVFEHPTQPGNQSGGWMAKERHLEISAVAPPTLKKSISTPFMNTASKMYS
MSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINAGTDCTEEFDAIHSDKAKKLLEDFRIGELITTGYTSDSSPNTSVHGSSS
ISSFLAPIKELVQTPTRSVALIPREKIPCKLVDKQSISHDVRKFKFALPSEDQVLGLPVGKHIFLCATVDDKLCMRAYTPTSTVDEVGFF
ELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQSILKDPEDDT
EMYVVYANRTEDDILLKEELDAWAEQIPDRVKVWYVVQESITEGWKYSTGFVTEAILREHIPQPSHTTLALACGPPPMIQFAINPNLEKM
GYDIKEELLVF

SignalP predicts non-secretion with a score of 0.035

IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 NADH:cytochrome b5 reductase (CBR)
IPR001199 Cytochrome b5
IPR000572 Oxidoreductase, molybdopterin binding
IPR008335 Eukaryotic molybdopterin oxidoreductase
IPR001433 Oxidoreductase FAD/NAD(P)-binding
IPR001221 Phenol hydroxylase reductase
IPR005066 Mo-co oxidoreductase dimerisation domain
IPR008333 Oxidoreductase FAD-binding region

Prediction based on longest six frame method

>SGN-P213280 (953 Aa)

GSPGLQAKSKYKERKISFLSSFFSIFPKFSHSYIYFLITQLSMAASVENRQFTHLEPGLSGVGRNFKPRPDSPVRGCNFPPSSNHELPFQ
KQQNLPIYLDYSSSEDEDDDDEKNEYVQMIKKGKTELEPSIHDTRDEGTADNWIQRNFSLIRLTGKHPFNSEPPLARLMHHGFITPVPLH
YVRNHGPVPKASWADWSVEVTGLVKRPMKFTMDQLVNEFPSRELPVTLVCAGNRRKEQNMVKQTIGFNWGAAAVSTTVWRGVPLRPLLKR
CGVHSKKKGALNICFEGSDVLPGGGGSKYGTSIKKEFAMDPSRDIIVAYMQNGEMLSPDHGFPVRMIIPGFIGGRMVKWLKRIVVTTQES
ESYYHYKDNRVLPPHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINAWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGETW
SVCTLDHPEKPTKYGKYWCWCFWSLEVEVLDLLSAKEIAVRAIDETHNTQPEKLIWNVMGMMNNCWFRVKMNVCKPHKGEIGIVFEHPTQ
PGNQSGGWMAKERHLEISAVAPPTLKKSISTPFMNTASKMYSMSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINAGTDCTE
EFDAIHSDKAKKLLEDFRIGELITTGYTSDSSPNTSVHGSSSISSFLAPIKELVQTPTRSVALIPREKIPCKLVDKQSISHDVRKFKFAL
PSEDQVLGLPVGKHIFLCATVDDKLCMRAYTPTSTVDEVGFFELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGK
GNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQSILKDPEDDTEMYVVYANRTEDDILLKEELDAWAEQIPDRVKVWYVVQESITEGWKYS
TGFVTEAILREHIPQPSHTTLALACGPPPMIQFAINPNLEKMGYDIKEELLVF

SignalP predicts non-secretion with a score of 0.143

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	174	Cyt_B5	80
2	24922	FPN_cyt_redctse GH_BNR FAD_binding_6 Oxred_FAD/NAD(P) Cyt_B5_reductase Cyt_B5 Mo-co_dimer Phe_hydroxylase Oxidored_molyb Euk_Mb_oxred	7
5	58955	FPN_cyt_redctse GH_BNR FAD_binding_6 Oxred_FAD/NAD(P) Cyt_B5_reductase Cyt_B5 Mo-co_dimer Phe_hydroxylase Oxidored_molyb Euk_Mb_oxred	7
1.1	101530	Cytochrome b5	85
2	120603	Mo-co oxidoreductase dimerisation domain - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase molybdopterin binding - Biological Process: electron transport (GO:0006118) Eukaryotic molybdopterin oxidoreductase - Biological Process: electron transport (GO:0006118)	8
5	133274	Nitrate reductase NADH dependant - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) - Molecular Function: molybdenum ion binding (GO:0030151) - Biological Process: nitrate assimilation (GO:0042128) - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors with NAD or NADP as acceptor (GO:0046857) - Molecular Function: FAD binding (GO:0050660) Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) NADH:cytochrome b5 reductase (CBR) - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Cytochrome b5 Mo-co oxidoreductase dimerisation domain - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase FAD-binding region - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase molybdopterin binding - Biological Process: electron transport (GO:0006118) Eukaryotic molybdopterin oxidoreductase - Biological Process: electron transport (GO:0006118)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U246823	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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