Sol Genomics Network

Unigene SGN-U271668

Unigene Basic Information

Unigene ID:	SGN-U271668
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271668
mRNA sequence:	Length: 1012 bp

>SGN-U271668 Solanum tuberosum #4 (7 members)
CTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAATGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTG
CCAGAGAAGGATGAGACTAGTATGTCCCGTAAGCAGATGCTTGCTCGGCTTGATGTTTGCATGGGTGGACGAGTTGCTGAAGAGCTCATT
TTTGGAGAAAGTGAAGTAACTTCTGGTCCTTCTAGCGATCTCCAGCAAGCAACCAATCTAGCCAGGGCCATGGTTACAAAGTTTGGTATG
AGCAAAGAAGTGGGGCTTGTCACCCACAACTACGATGATAATGGGAAGAGTATGAGCACTGAAACGAGGCTTCTCATTGAGAAGGAAGTA
AGAGAATTACTTGAAAGGGCTTACAACAATGCGAAAATGATTCTCACCACCCATATCAAAGAGCTTCATGCGCTTGCCAATGCATTGCTT
GAGCAGGAAACGATGACCGGAAATCAGATTAAGGCCCTGCTTACCCATGTCAATTCTCAACAAACACAGCAAAAGAAACCTCAATTAGTC
TCAGAGGAGAGTCCATCACAGTCCAATCCATCTCCTCCATCAAATCCGGCTGCTGTTGCAGCAGCTGCAGCCGCTGCAGCTGCGGCCACT
GCCGCAGCCAAAACCCAAGGCATTGCTCCTGTAGGATCTTAGCATGGTAACTTCTTGTTAGTTTTTATCAATCCATGTGCATATAGTGGA
TCATTCTCATGCATGGTTTCAACCCTTTCATTGCTATCAAGAAGGTGATTAGTGTATGGAGGTGAGTTTAGAGGTCAACGGAAATAGTAA
CAGATAAATGGCATATCTATATTGTCAAGTGTGTCATTTTTAGCTGATCTCTTTCTTCTGGTGTTATAAGCCCACTTAGCTGACCTTTAC
AGATCTTAGTTTAATTATCTGCAGACTCATTGCCTATTTGAGTTGGATATTTTTCATGAGTATATTGTAAAATTAGGAGTGTCACAAACT
TCATCACTTTCCAATAATGCAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	26327		5
5	62340		3
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	131838	Peptidase S16 lon protease - Molecular Function: ATP-dependent peptidase activity (GO:0004176) - Molecular Function: serine-type endopeptidase activity (GO:0004252) - Biological Process: proteolysis (GO:0006508) AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) Peptidase M41 - Molecular Function: metalloendopeptidase activity (GO:0004222) - Molecular Function: ATP binding (GO:0005524) - Biological Process: proteolysis (GO:0006508) Peptidase M41 FtsH - Molecular Function: metalloendopeptidase activity (GO:0004222) - Cellular Component: membrane (GO:0016020) - Biological Process: protein catabolism (GO:0030163) AAA-protein subdomain - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U245726	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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