Sol Genomics Network

Unigene SGN-U271681

Unigene Basic Information

Unigene ID:	SGN-U271681
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271681
mRNA sequence:	Length: 1501 bp

>SGN-U271681 Solanum tuberosum #4 (13 members)
TTCAACTTTCTCTCACTATATATCTATATATCTCTATAGTTTCGATTGTAGCAAAAAAAATAAAAAATTTAATCATATAGGACCTTAATT
TCCCCAAAAAATCAGAACCCCAGAATCAGTTCTTGTTGTTGTTGTTGTTGTTGTTTTTCTTGGATCATGTAAAAAAGACCCATTTGGATT
TGGATCTTGATTTGGGGATTTGATTGAATTGGGTTTTGATTGGAATTCGGGTTTTTCAGCCATGACCCGTCGATGTTCACATTGTAGTAC
CAATGGACATAACTCAAGGACTTGTCCTAATAGAGGTGTGAAGTTGTTTGGGGTCCGATTGACTGATGGGTTGATCCGAAAAAGTGCTAG
TATGGGTAATTTGACCCATTTTGCTAGTGGAAGTGGAGGTGGTAGTACACCTCTAAACGGTGTCGTTCATGACTCACCTGGTGATACACC
TGATCATCCTGCTGTCGGTGGTGGCTCTGCTGATGGTTATGCTTCAGAGGATTTTGTTGCTGGTTCTTCATCTAGCCGTGAAAGGAAGAA
AGGGGTTCCCTGGACTGAGGAGGAGCATAGGATGTTTCTACTTGGTTTGCAAAAACTCGGTAAAGGTGATTGGCGTGGAATTGCTCGTAA
CTATGTGATCTCTAGAACGCCCACCCAGGTGGCAAGCCACGCCCAGAAATATTTCATTAGGCAAAGTAATATGTCAAGGAGAAAAAGACG
CTCCAGTCTGTTTGATATTGTTGCTGATGAATCGGGGGACACTCCAATGGTATCAAGGGATTTCCTCGCAGATGATCCTGCACAAGCTGA
GATGCAAAGCAACAATCTGTTGCCTCCTACTCCTGCTGTGGATGAAGAATGTGAATCAATGGGTTCAGCAGCTTCTGCCAACTCCATCGA
TGGGGAACATGCTCTTCCTATACCAGAAAGCTCACAATATCAGCATCCACTTGTTTATCCTGCTTATGTTGCTCCATTTTACCCGATGCC
TTATCCATGCTGGCCAGGTTACACTGCAGAGCCAGCAATAGCTGAGACCCATGAAGTTCTGAAGCCAACAGCTGTTCATTCAAAGAGTCC
AATTAATGTTGATGAGCTGGTTGGTATGTCAAAGCTAAGCTTAGGTGAATCCATTGGTGATGCTGCCAAGCCACCTTCTCTGTCACTAAA
GCTGGTCGAGGGCTCCTCCAGGCAGTCAGCTTTCCATGCTAATCCGTCATCTGGTAGCTCAGGCATGAACTCTAGCCACAATCCAATCCA
TGCAGTTTAGTGGGGTGCATTCACATGATATGTTTCCTGTTAATATATGAAAATGTTCTCTAGTTTGGTTGGTTAGTTATAGTTCTATTT
GTTGGGTCGATCTTAATAAGACTGTTTAGGTGTTAACTGCTTAGTTGGCAATACTCATAGCTTTGTAGGCACTCTTGTTTTGAAGTATTT
AAGTTGTTGACTTTGAGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
mybst1	Myb-related transcriptional activator	Myb-related transcriptional activator

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (13)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	111	Myb_DNA_binding	121
2	22066	Myb_DNA_binding	83
5	57020	Myb_DNA_binding Myb_SHAQKYF Znf_CCHC	18
1.1	101455	Homeodomain-like	138
2	118493	Homeodomain-like	82
5	130050	Myb-like DNA-binding region SHAQKYF class Zinc finger CCHC-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270) Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	13

Preceding Unigenes (1)

Unigene	Build
SGN-U246633	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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