Sol Genomics Network

Unigene SGN-U271847

Unigene Basic Information

Unigene ID:	SGN-U271847
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271847
mRNA sequence:	Length: 1436 bp

>SGN-U271847 Solanum tuberosum #4 (12 members)
GGAGAGGAACTAGGGTCTCACTTTTTTTTCAGTAGACAGTAGCGTTCAACTCCGACGATGGTCTCCTTCTCCATTTGATATTTCCCCGAT
CTGATAGCCGGAGTAGTATAACGGATAAAGCTAAAAGGAAGAATCGGAAAATGACGATTCGTCTCTATTTGTTGTTTTCGTTTTTCGTTT
TACTTGCTCAATGGTCACCTGCACTTTCCGATCTAGTCATCTCCAAACTTGATCGAAAGATTGACCTAACCTCTCAAGTAGTGCGTGTGA
CTGCAAATTTGAAGATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTTTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCAT
TTTTAGTGGCAACAACCAGTGAAGGGAAAGGGAAAACTAAAACTTCTTCCAGTAGCCTACCTATCAAAGTTGTTAACCCTGAAGGCATGC
CACCATCATTGACTTGGTACTCTGTCTCCCTACCGAAGGAGCTGGCAAAGGGGAAGAGCCTGAATTTGGAAGTCAGGACTGCATTTACGC
ATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTTCTTGTGTTCCAGGAGAGTGCCTACTATATTTCTCCTTATG
CAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAG
AAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTTGCAGTTG
CCCAGGAGTTGGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTACAACCTTGTCAATGCTGGTGCCAGAA
GCAGTGGGGAGTTTTCAAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTC
CAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGACTCATCAAAGACATTGCTACAAA
TTGAACCTAGGTATCCAATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAAGGGACTATTTGTTCCGTGCA
GAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTAGTTGAAAACCTTGTTGTGAAGGTTGTTCTGCCAGAA
GTTCAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCGAGAGAGACGAAATTTTCCCATTTGGATATGATTGGTAGACCAGT
GGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAGGTCTATTACAGGTTCAGCAATCTGTCACTGCTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1227	Ribophorin_I	15
2	23119	Ribophorin_I	15
5	57285	Ribophorin_I	14
1.1	102587	Ribophorin I - Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579) - Cellular Component: endoplasmic reticulum (GO:0005783) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: integral to membrane (GO:0016021)	12
2	119811	Ribophorin I - Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579) - Cellular Component: endoplasmic reticulum (GO:0005783) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: integral to membrane (GO:0016021)	12
5	130133	Ribophorin I - Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579) - Cellular Component: endoplasmic reticulum (GO:0005783) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: integral to membrane (GO:0016021)	12

Preceding Unigenes (1)

Unigene	Build
SGN-U245945	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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