Sol Genomics Network

Unigene SGN-U271919

Unigene Basic Information

Unigene ID:	SGN-U271919
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271919
mRNA sequence:	Length: 1494 bp

>SGN-U271919 Solanum tuberosum #4 (11 members)
CGTCAAAAGGAATAATTGTTGTTTGAATTCAGAGATCGGCGGTTTGAATTCAGAGATCGGCGGCGAGTAAAGAGAAATGGAGAAAGAGGG
AAAAAGCGACGCCGATAACCGGAGTACAATCACAGTGAATGTTAAGTTCAGTGGTCGATCGATACCGGTGGAAATCTCCGACGAGTGCAC
TGTCAAACACCTCAAGTCTCTCCTTCAACCACTCACAAATGTCCTCTCTCGCGGCCAAAAACTCATCTTCAAAGGGAAAGTTTTGGTGGA
TGAAATAACATTGAAGTCATCGGAGGTTGGAAATGGTGCGAAGATCATGCTTATGGCTTCCCAGGGCTTACATCAAGGGGATGGACCAAT
AAGAAAGGAAGCTTCCAACTTGCCCACAGCGAGGAGGATGCCTGAAGCTATGAGACCTAAAAGGGATGTTCCTCAAGTTCCTGTTGTGAA
GAGCCAACTTGAACGGTGGAAGGCCACTGGGGTTGTTGCATTATCAGAATGCAATCTGAAGGTCTTGCCTGATGAAGTGTTGACCTGCGG
ACCTTCCGCTAGAGTCCTGGATCTCAGCCACAACGCCATACAGCATCTTCCAGCCGCAATTAATAGCTTGAGTTCTCTTCAGAAATTGAT
CCTCAATGGGAATGAAATTATGGATAATTCCTTAAGCTGGGAAGAGCTAGCTTCTCTAAAGAGTCTTATGGTTATCTCACTGAACCAAAA
CCACATAGCAACGCTGCCTCCTGAGGTCGGCACTTTGACCGGTCTGAGACAACTTCATATTGCACATAACGAGTTAACAGGTCTCCCATC
TGAGATAGGTCTGCTGACCAGCCTTGAGGTTCTGAAAGTTAACAACAACAGGATACGCTCTATTCCGGAAAGTATAGGGGGTTGTGTTTC
TCTTATTGAGGTTGATCTTTCATCTAATCTTTTGGTAGAGCTGCCAGAAACAATTAGCAAACTAAAGGACTTAAAGGCACTTTATCTTAG
GAACAACGGGCTCAAATCCCTTCCTAGCAGCATTTTTAAACAGTGCTGTCAACTCTCTACACTAGATCTCCATGGAACTGAAATAACTAT
AGATGTTATCTGCCAGATTGAAGGATGGGAGAATTTTGATGAGAGAAGACGCTCGAAGCATCAGAAACAACTGGACTTCAGAGTGAGCAG
CTCTGGCAAATTTGACGAAGGAGCTGATCAAAGCTGATAAGGCCTGATACAAATTGCTCGGTAACTCGGTTGTATATACACCCTGACACA
CATTTGCATAGTGATCCCTAGCAAACACAGAAGAATCTTGTAGTACCTGTTAAGATACATCAAGAAATTATAATGAGCATACTTGCTCCT
CTGTGCACTCCCTAAAGATGATTAAATTTTCTGAAGGCTTACTATAAAGCTTTCTGCATCTTCTCAAACTGTTACGTATATAGTTGAATG
AAAATTCCCTTTTAAGGATACATATTACAAATTGCTGAACCCCTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1	Prot_kinase	3744
2	23825	Ubiquitin PAH PPR LRR LRR_typ Rad23	10
5	60157		5
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	120244	Leucine-rich repeat Leucine-rich repeat typical subtype	10
5	132515	Leucine-rich repeat Leucine-rich repeat typical subtype Ubiquitin - Biological Process: protein modification (GO:0006464) Pentatricopeptide repeat	5

Preceding Unigenes (1)

Unigene	Build
SGN-U246971	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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