Sol Genomics Network

Unigene SGN-U272039

Unigene Basic Information

Unigene ID:	SGN-U272039
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272039
mRNA sequence:	Length: 2132 bp

>SGN-U272039 Solanum tuberosum #4 (10 members)
GATTGAATTGCCTATCAACTTCGCTAGTAAACTAGTAAGCACTCAGTTAATATAAAAAGTAAGCGAACAGTTCTCTCCATCACAATTCTC
TCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGGTGTAATTTAACGAGAAAGCAACGAAGAAGAACATTCATCGAAGAAGATACAAT
TAGCAAACTCAAAAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTAAAGCATAAAAGGCTTTCAAAATGCAAACTTCAAC
TTTCACAGTCAAAGGCAACACAGGATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGCGTTAGTGACTTGCGTAGTAGGAATTTAGCTGG
TAAAAGTCTCCGGATGACGGAGAGGAACAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCTATGGGAATCGAACTTGGCCGTGCTAGGAG
GACTGTTCAAAGTGTCTTCGGTTCGTCGGCAAAGGCCAGATCACACAGAGTTCGAGCTGCTGGAGAGGATATTGAGGATGCAGCACCTCT
CAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGGAGCAATTTTATTTGGATATCACCTAGGGGT
GGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGATGGATTGTTAGCACAGTTCTTGC
TGGCGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTC
AGTTGGTGCGTTTCTATGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATC
TGCTATTGTGCCACTTTACATATCTGAGATCTCACCCACTGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGG
AATTCTTGTTGCACTCGTGGTTGGATTGCCTTTGTCTGGAAATCCTTCGTGGTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGT
TTTACTTGCAATAGGAATGGCATTTTCTCCTGAAAGTCCTCGGTGGCTCTATCAGCAAGGGAGAATTTCTGAAGCTGAGACATCTATTAA
AAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCT
TGATCTATTTAGTAGCCGTTATAGGAAAGTTGTTAGCATTGGTGCAGCTATGTTCTTGTTGCAGCAGTTAGCTGGGATAAATGCTGTTGT
CTATTATTCCACTGCCGTGTTCCGAAGTGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTGGGAC
AACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATGGCTGCATCAATGATGTTGCT
TTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCTCTATGTGTTGTCCTTTTCACT
TGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCGGTGGCTCTCTCTTTGGGGGTACA
TTGGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTC
TTGTCTTGTTGCTGTCGTGTATATAACTGGTAATGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGC
AATTTGAGTGGTACAACATGAACAGCTGAGAGTAATTTCAGATTCCGCCATCCAGTGGGTCTTGATTTTGAAGAGATTCTCCACATTGGG
AGTTCTATTATTGCGAGACTGGAGTTGTATCACTTACCCTTTAGCTATCTCTTTGATTTTCTTGTACGTCGGCATCATGAATCATGGAAC
ATTGTAAAAACATGTAACTGTTATGGAAGATGATCCGCGTATGATTGAGTATTTCAAAAAAG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pglct	hexose transporter	hexose transporter

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	55	MFS	221
2	22011	MFS	149
5	56822	Drug_resist Cit_H_symport Dgal_transporter GlpT_transporter Sugar_transpt SA_transporter Sub_transporter Pi_cotranspt MFS NO3_transporter Orgcat_transp Bnzte_transport Sug_transporter Phos_permease	22
1.1	101430	Major facilitator superfamily - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	189
2	118452	Major facilitator superfamily - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Sugar transporter - Molecular Function: sugar porter activity (GO:0005351) - Biological Process: carbohydrate transport (GO:0008643) - Cellular Component: membrane (GO:0016020)	124
5	131137	Major facilitator superfamily - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Sugar transporter superfamily - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020) Sugar transporter - Molecular Function: sugar porter activity (GO:0005351) - Biological Process: carbohydrate transport (GO:0008643) - Cellular Component: membrane (GO:0016020) General substrate transporter - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	7

Preceding Unigenes (2)

Unigene	Build
SGN-U246369	Solanum tuberosum #3
SGN-U254624	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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