Sol Genomics Network

Unigene SGN-U272047

Unigene Basic Information

Unigene ID:	SGN-U272047
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272047
mRNA sequence:	Length: 1227 bp

>SGN-U272047 Solanum tuberosum #4 (12 members)
GGAGACAGTTATTGAGGGAATGGGAGAATTACATCTTGAGATCATTGTAGATCGACTGAAAAGGGAATTTAAGGTGGAAGCTAATGTTGG
AGCTCCACAAGTAAACTACCGTGAGAGCATTTCCAGGAACGCAGAAGTGAAATACGTGCACAAGAAGCAGTCTGGTGGTTCAGGACAGTT
TGCTGATATCACAGTAAGGTTTGAACCCATGGAAGCAGGCGGTGGATATGAATTCAAGAGTGAAATCAAGGGAGGTGCAGTGCCAAAAGA
ATATATTCCAGGTGTTATGAAGGGATTAGAAGAATGCATGAGTAACGGGGTACTGGCAGGCTTTCCCGTTGTTGATGTTCGTGCTGTGCT
AGTAGATGGCTCTTACCATGATGTGGATTCAAGTGTTTTGGCATTCCAGCTGGCTGCTCGGGGAGCTTTTAGGGAAGGGATGAGAAAAGC
TAGTCCACAATTGCTAGAACCCATAATGAAGGTTGAAGTAGTAACACCAGAAGAACATCTAGGAGATGTGATTGGTGACCTTAATTCAAG
GAGAGGTCAGATCAACAGCTTTGGAGACAAACCGGGAGGTCTCAAGGTGGTGGATGCTTTAGTTCCATTAGCAGAGATGTTCAATTACGT
TAGTACCTTGCGAGGGATGACAAAGGGTCGTGCATCTTACGTTATGCAATTAGCCAAATTTGACGTTGTCCCTCAACACATTCAAAACCA
GCTTGCCAAAAAGGAGGAAGCAGCAGCCGCTTAGTCAGTCATCTTCCAGATTTTGGATCCACGAACTTGAAAATAGGTATTTTTACTCGA
CAAAGATGTTAAGGCTTGCACAACATTCTTTTTGTACGTACTAGCATGAAACACCGATGGAGAATAGCTGATATTTAGTTATACGTCTGA
GTTTTTTCAGCCATTTGTGTATGTCGTTGAATTTATAAGCTGAGACTCCGAAGGGACAGAAGAAAGAAAGGACTAAATGTGTATACATGC
ATTTAAGATATCTCTGCATCCAAAGAAGCATCAATATTTTAGGGCAAGATTGAGTGTGTCCTGATTTTGGGATTATTTTTCTTACTATAG
AAGAAACAAATATATGCTTTGTAACAATTTGATGCTCTTTATTGAGATCTTAGGTGTAACATCTGACGGTTTGAGTTGTTTATTTCACAT
TTGTTTTATGTTGCAAAAAAAAATATAATATTGAGGTCCAAACTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	23156	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	15
5	57231	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	15
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	119664	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13
5	129999	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U245749	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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