Sol Genomics Network

Unigene SGN-U272121

Unigene Basic Information

Unigene ID:	SGN-U272121
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272121
mRNA sequence:	Length: 1697 bp

>SGN-U272121 Solanum tuberosum #4 (7 members)
CAGAAGTACTACCGATCTGTCAGTGGATACGCGGATGAATTACTATGGGGAGCAGCATGGTTATACAAGGCATCAAACAATCAATTTTAC
TTGAATTATTTGGGAAGAAATGGTGATGCTCTTGGTGGAACTGGTTGGTCCATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTC
CAAACTCTTGTTGCTCAGTTCTTGATGTCTGGTAAAGCTGGTCATAATGCACCTGTATTTGAGAAGTACCAGCAGAAAGCAGAGAACTTT
ATGTGTTCATGTCTTGGAAAGGGTGACAGAAATACCCAGAAAACTCCTGGAGGTCTCATCTATAGGCAAAGATGGAACAATATGCAGTTT
GTTACTAGTGCTGCATTCCTTGCCACTACTTATTCTGACTATTTGGCCTCTGCTGGCAAATACCTCAAGTGTTCTTCTGGTTCTGTTTCT
CCGAATGAGCTTCTCTCATTCGCCAAGTCTCAGGTGGACTACATTCTTGGTGACAACCCGAGAGCAACAAGTTACATGGTGGGATATGGA
AACAATTACCCGAGACAAGTACACCACAGAGCTTCCTCCATTGTCTCGTTTAAGGTTAATCCTAGTTTTGTTAGCTGCCGGGGAGGCTAT
GCTACCTGGTATAGCAGAAAGGCGAGCGATCCTAATCTCCTTACTGGTGCTCTTGTTGGTGGTCCTGATGCCTATGACAACTTTGCTGAT
CAAAGAGATAACTATGAGCAAACTGAGCCTGCCACTTACAACAATGCTCCGTTGATCGGTGTGTTGGCAAGACTTCACGCTGGTCACAGC
GGTTACAATCAGCTCCTTCCAGTTGTTCCTGACCCAAAGCCAACGCCAAAGCCAGCTCCTAGAACTAAAGTAACTCCAGCTCCAAGGCCA
AGAGTACTTCCAGTCCCAGCTAATGCTCATGTTACTATTCAACAAAAGGCAACTAGTTCATGGGCTCTGAATGGAAAGACTTACTATAGA
TACTCAGCAGTTTTAACCAACAAGTCTGGAAAGACGGTTAAGAACTTGAAGCTCTCAATAGTCAAGCTCTATGGTCCTCTCTGGGGTCTA
ACAAAGTACGGTAACTCGTTCATCTTCCCAGCCTGGCTCAACTCATTACCAGCTGGTAAAAGCCTAGAGTTTGTGTACATTCACACTGCT
TCACCTGCAATCGTCTCCGTTTCAAGCTACACTCTAGTCTAAAAGAGATCAAGAAGTTAAAAAAAGGAAGTGGAAATGAAATGCTCACAC
ATTTTTCTTGTGGTTCTAATGTAAGACTTGTGCAGCTATACTACTACTACTAGTACTAAACGGCGGGGTCAAGCAAGTCCTTTCATCGTT
CTTTTTTCGTTCTCTTGGAAGTTTGTCTGTAAGTTTCAACGTCTTGTTGGTTTGCTTTTGATTAGGACTATAGATAACGACGTTTTAGGT
TGATAATGTGGAGAAGTCGGAGGAAGAAAGGAGTGAAGAGACGAGTTTATACAAGTGCTCATCCTCTTTCTCCTCCACTTTATATATATA
CACAGTGTTTGAGAAACAGAGAAAAAGAGTGAAAGGGGTTGTGAAGCAAAGAAAGTTTTGCTTTTTGCTTCTCTATATTATTATTATTAT
TGTTATATCATCTAAAGTCTTCATTTACCTTTGTAATTTGAATGCAAGCTTGAAATGTTCCTAATCAAATTGATTTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	141	Glyco_hydro_9	94
2	22055	Glyco_hydro_9	92
5	56348	Glyco_hydro_9	63
1.1	101447	Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	149
2	118491	Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	84
5	129031	Glycoside transferase six-hairpin subgroup Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	57

Preceding Unigenes (1)

Unigene	Build
SGN-U246581	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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