Sol Genomics Network

Unigene SGN-U272166

Unigene Basic Information

Unigene ID:	SGN-U272166
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272166
mRNA sequence:	Length: 1206 bp

>SGN-U272166 Solanum tuberosum #4 (11 members)
TTTGAATATGGGCACAGCAAAAGCCCCTATTCTTCTCAGTAGCCGACCAAGCTTTTGTAATATTGTAGCGCCGAAATCAGGAGCAAGGAG
AGCGTTTCCTTCTCGGCCACTGACACAAATGGAAACCGGCGGATTGGACTCTGACGGCCGTACGTTTAAAAACGCGGAGGAGATGTGGAG
AGAAGAAGTAGGGGATGGTGATCCCCAGAAGAAGTTCCAGTGGTACAACAAAGGCATCAATTACTGGCAAGGCGTGGAAGCCACAGTGGA
TGGAGTGCTGGGTGGATATGGGCATGTGAATACGCCTGATATAAAGGCAAGTGAGGATTTTCTCAACACCATTTTGGCTGAAAGGTTCCC
TGATGCTGGAAGAGGCCGCCATCTCGTAGCTCTCGATTGTGGATCTGGCATTGGAAGGATTACTAAAAATCTTCTTATACGATATTTCAA
TGAGGTCGACCTCCTAGAGCCTGTATCACATTTTCTGGAATCTGCTCGGGTAAATTTGGCTCCTGAAAATTTAATGGTGTCAGAGTTGCA
CAAAGTTGCCAACTTTTATTGTGTCCCACTTCAGGAATTTACTCCTGATGCTGAAAGATATGACGTTATTTGGGTTCAGTGGTGCATTGG
GCATCTTGCAGATGATGACTTCATTGCATTCTTCAAGAGAGCAAAGGTTGGCTTGAAACCTGGTGGACTTTTTGTTCTAAAAGAGAACAT
TGCAAGAACAGGATTTGTGTTGGACAAAGAAGATAAGAGCATCACAAGATCAGATTCATATTTTAAGGAGCTGTTCAAGCAATGTGGACT
ACACATCTACAAGATGAAGGATCAAAAGGAATTTCCTGATGAATTATTTGCTGTGAAGATGTATGCATTGACGACTGAGATGCCAGGGCA
AGGTAATAAACCTAGACCTAAACGGGCAACTAATAGACCTGCCATCATCAGATAATGAATCACATTGGTCAGTAAATGAATGTGTGGTAA
CTTCGGAGAAAGTCATTCATAGGTTGTTTTTATGCCACATGTATTCAAGCTGGTCAATGTATGCCTTGTTTAGGTTATTGCTTTTGAATT
TCAGCTGTATACACTGATAGTGTAAGGGCGATAAATGTACTTTTAACTTATTTTAGATTATTGCTTATGGTGAAGTTCTTGTGCAACTGA
TTTTAGTTTGAATGTGCATTTTTTTTTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	154	SAM_bind	88
2	25977	C2 SAM_bind Methyltransf DUF858	5
5	59961	C2 SAM_bind Methyltransf DUF858	5
1.1	101467	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	119
2	123872	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Protein of unknown function DUF858 methyltransferase-like Generic methyltransferase - Molecular Function: methyltransferase activity (GO:0008168)	4
5	134041	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Protein of unknown function DUF858 methyltransferase-like Generic methyltransferase - Molecular Function: methyltransferase activity (GO:0008168)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U246499	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer