Sol Genomics Network

Unigene SGN-U272280

Unigene Basic Information

Unigene ID:	SGN-U272280
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272280
mRNA sequence:	Length: 1521 bp

>SGN-U272280 Solanum tuberosum #4 (10 members)
CAAATATCATAAGAAAAATATTAGTAATGGCTAATACCAAAGACTCATACCACATAATTACAATGGATACCAAAGAATCTTCAATTCCAA
ATCTTCCAATGAAAGAAATTCCTGGTGATTATGGTGTCCCATTTCTTGGGGCAATAAAAGATCGTTATGACTTTCATTACAATCAAGGTG
CTGATGAATTTTTCAGGTCTCGTATGGAAAAACATGATTCCACTATCTTTAGAACTAATGTCCCTCCTGGTCCTTTCAATGCTCGTAACT
CTAAAGTTGTTGTCCTTGTGGATGCTGTTAGTTATCCCATTCTTTTTGATAGCTCACAAGTTGATAAGGAAAATTACTTTGAAGGTACTT
TTATGTCCTCTCCATCTTTCAATGGTGGTTATAAAGTTTGTGGTTTTCTTGGTACAACTGATCCTAAACACACTACACTAAAAGGTCTTT
TCTTGTCTACACTTACTAGATTGCATGACAAGTTCATTCCTATCTTTACTACCTCAATCACTCAGATGTTTACAAGTCTTGAAAAAGAAT
TGTCTGAGAAAGGAGCGTCTTACTTCAATCCCATAAGTGATAACTTGTCGTTTGAATTCCTATTTCGATTGTTTTGTGAGGGGAAAAATC
CAGTCGATACAAGTGTTGGGACTAATGGACCAAAAATTGTTGATAAATGGGTTTTTCTTCAACTAGCTCCATTGATTTCACTAGGCCTTA
AATATGTACCAAATTTTCTTGAAGATTTGGTGTTGCACACTTTCCCTCTACCTTACTTCCTTGTAAAAGGAGATCATCAGAAACTATACA
ATGCGTTCTATAACTCCATGAAGGATATTTTAGATGAAGCGGAGAAACTTGGAGTTAAAAGAGATGAAGCTTGTCATAACTTTATTTTCC
TTGCGGGATTCAATTCATATGGGGGTATGAAAGTGTTCTTTCCATCTTTGATAAAGTGGATTGGAACATCAGGACCTAGTTTACATACTA
GGCTTGTTAAAGAAATCAGGACAGCGGTTAAAGAAGCAGGAGGGGTAATTACTCTTTCAGCTATTGATAAAATGCCTCTTGTTAAGTCTG
TGGTTTATGAGACCTTAAGAATGGACCCTCCAGTTCCGTTCCAAACCGTTAAGGCTAGGAAAAATATAATTGTTTCTAACCACGAAGCAT
CGTTCTTGATCAAGAAAGATGAATTGATTTTTGGATATCAACCATTGGCTACAAAGGACTCAAAAGTTTTTAAGAATGGGGAGGAGTTTA
ATCCAGATAGATTTGTGGGATATGGAGAGAAGTTGCTTAAGTATGTGTATTGGTCAAATGGTAAGGAGACTGATAATCCAACTGTGAGCG
ATAAACAATGTCCTGGGTAAAGATTTGATAGTGTTATTGGGAAGGTTATTGGTGGTGGAGTTTTTCATGCGTTATGATACTTTTGAAATT
GAATTTGGAAAACTCTTGCTTGGTTCAAAGGTGACTTTTAAATCATTACCTAAAGCAACATCATGAATATAAGGGTGGGTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
aos3	allene oxide syntase	allene oxide syntase

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	525	Cytochrome_P450 EP450IV	34
2	22360	Cytochrome_P450 EP450IV	33
5	56555	Cytochrome_P450 EP450IV	32
1.1	101962	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	27
2	118907	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	26
5	129313	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	26

Preceding Unigenes (1)

Unigene	Build
SGN-U246375	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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