Sol Genomics Network

Unigene SGN-U272630

Unigene Basic Information

Unigene ID:	SGN-U272630
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272630
mRNA sequence:	Length: 1702 bp

>SGN-U272630 Solanum tuberosum #4 (9 members)
TAGGAATTGTCTCCCACTCCCTCCCTCTCCCGTTTTTCTCAGAAACCCTAACTCTCTTCCTTGAACAGAGAGAGAGAGAAAAACCCCACT
GTTCAATCCCAAATCGCTTTCGGAACCCTAGCGGATCAGCACGCATTAATTTCTTCCGATTTGATTCAATTGCTATAGCGAGGAGCACTT
TGGGTTTTCTGTAGGGATCAATGGGGAAGAAGAAGAAGAGATCAACCGATAAGGTATGGTGCTACTACTGTGACAGGGAGTTCGATGATG
AGAAGATTTTGGTTCAGCATCAAAAGGCTAAACACTTCAAATGCCATGTTTGCCATAAGAAGCTTTCTACTGCTGGCGGCATGGCCATTC
ACGTTCTCCAGGTTCACAAAGAAACCGTCAGCCAGGTACCAAATGCCAAACCTGGCAGAGAGTCTACTGATATTGAAGTATATGGAATGC
AAGGAATCCCAAGTGATGTCTTAGCAGCTCACTATGGAGAGGAAGAAGATGAGTCCCCAGCGAAAACTGCCAAAGTGGACATTCCATCTT
CCCAGTATCTTGGTGGTGCAATTCCAGGATATCCTCCCCGGGCAACTTTTGGTGCAGTGCCACCACTCTATAATCCTGCGCTGCCTATGC
CTCCTGCTGGTTGGTCAGTCCCCCCTCGCCATCTTCCATGGTATTCACAGTATCCTGCTGTCTCAGTTCCACCTCCTGCACTGATGGGTC
TGCCACAAACAACCATTATTTCCTGTGCAAAATATGAGGCCTCCAATGCCAGCCACTGCACCTCCAACGCTTGTTGCTCCTCCAGGGCTC
CCGGCCCCACCTGTTCCTGTATCTCAACCCTTGTTTCCTGTTGTTCCTAATAACAACAACCTTGCCCAAAGTTCGCCATTCTCAGCGCCG
ATGCTGTCAACTAATGTGCCATTCAGCTCTGCAGCTGAAACAAAGAGCTTATTTGACCCAAACATGGGCAGCAATGCTCCTGCCGCCATT
GGTTATCAGACTTCAGTCCCAGCACCGGCAAATTCACATTCTTATGCCTCTGGCCCAAATACTGGTGGGCCCTCAATTGGTCCACCACCT
GTTATTACCAACAAAGCTCCAGCTAACCAACCAGCAACAAATGAGGTCTACTTAGTTTGGGATGATGAGGCCATGTCCATGGAGGAAAGA
AGAATGTCCTTACCAAAGTATCAGGTGCATGATGAGACTAGCCAGGTAAGTTATAATTACCTAATACTAGTATTTGTTCCTATGAAAATG
GGACTTGTGTTGTAGGTTGGTGTTAGTTTCATGTCTCGGATTCAGTTGTTTACTATTCTTTTGTAAGTTTTCCCATTCTCCTTCATCTTC
TTGGAAATAGCATACTCTTGGATGAGTATCTGGTAATCAATCAATTTAGTGTATGTTTCAACCCCATTAATTAATGGGCTTCTTTTATCT
TCTTTTGGCCATTCTCCGGTTGGCAAGCAATCCCAACAGTTTTGTGGTCATCAATGATTCAAGTATGTATCTTCATTATCTTTTGCTGGT
AGTTAAGTAATGCCATTTCTAATTACTGTGCTGCCATCCACTCAAGGGGGATCTCAGCAGAGTGCATGTATTAGTTCTTGGATATTTCCA
TGTTCTCTTTTACTTGACCTTGAAAGAGTTGGGCTGTGTGAGCAAAGCATAGACCCAACAGATGTTTGCAAATTACTATGAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	4

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1	Prot_kinase	3744
2	23858	Extensin_2 Znf_C2H2 Ig_MHC LIM BED_finger	10
5	58472	Extensin_2 Znf_C2H2 Ig_MHC LIM BED_finger	8
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	120113	Zinc finger BED-type predicted - Molecular Function: DNA binding (GO:0003677) Zinc finger C2H2-type - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270)	10
5	131208	Zinc finger BED-type predicted - Molecular Function: DNA binding (GO:0003677) Zinc finger C2H2-type - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270)	7

Preceding Unigenes (1)

Unigene	Build
SGN-U247368	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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