Sol Genomics Network

Unigene SGN-U272759

Unigene Basic Information

Unigene ID:	SGN-U272759
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272759
mRNA sequence:	Length: 789 bp

>SGN-U272759 Solanum tuberosum #4 (10 members)
CTAATGACCAAAACTCTGAATATAAAAAGAGTGAAAAAATGGCATTTTTCAGGTCCATTGTGACTGCAAAAACAACCGCCATTGCTGCTG
CTATTCCAGCTGCTGCTTTTGCTGTTTCTTCTATTTCTTCTTCTTCTTCGCAGTTTGAACGTCCATCGAAAAATCTAAAATTTGGCTCAA
TTTCAAGTTCGAATCCGATTCTCCAATTAAGCTTCGCGAAGAATCTACAAAAAACGAGTCCTCCTTCAGCTCTTCATATGGAAACGCCTT
CTTCCAATCACCAAACTTCCTCCGATAATGGAGTCGTTTTGCCTGAGTTGCTGACAGAGTTTATGGTGGACATGTCGTGTCAAGGCTGTG
TTAATGCTGTTAAGAGCAAATTGCAAACCGTAGAAGGAGTTAAGAATGTGGATGTGGACCTTGATAATCAAGTAGTGAGAATTCTTGGAT
CTTCACCTGTGAAGACTATGACTGAAGCCTTGGAGCAAACAGGTCGAAAAGCCCGTTTGATTGGACAAGGAGTACCCGATGATTTCCTTA
TATCTGCTGCTGTTGCCGAATTCAAAGGACCAGATATTTTTGGTGTTGTTCGCTTGGCTCAAGTCAATATGGAATTAACTAGGATTGAAG
CAAACTTCAGTGGCCTGTCACCTGGAAAGCATGCTTGGTCTATTAATGAATTTGGTGATTTGACGAGAGGAGCAGCTAGTACTGGAAAAT
TGTACAGCCCACCACTCGGTGACCTGGTTACACTGGGAGTTGATGAGAAAGGCGAGGCATTTTATACCG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ccs	copper chaperone precursor

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	5
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	760	SOD_CU_ZN	25
2	25809	Cu_bind_dom Metal_bind SOD_CU_ZN HeavyMe_transpt	6
5	59796	Cu_bind_dom Metal_bind SOD_CU_ZN HeavyMe_transpt	6
1.1	101992	Superoxide dismutase copper/zinc binding - Molecular Function: copper zinc superoxide dismutase activity (GO:0004785) - Biological Process: superoxide metabolism (GO:0006801) - Molecular Function: metal ion binding (GO:0046872)	25
2	121402	Superoxide dismutase copper/zinc binding - Molecular Function: copper zinc superoxide dismutase activity (GO:0004785) - Biological Process: superoxide metabolism (GO:0006801) - Molecular Function: metal ion binding (GO:0046872) Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	6
5	131630	Superoxide dismutase copper/zinc binding - Molecular Function: copper zinc superoxide dismutase activity (GO:0004785) - Biological Process: superoxide metabolism (GO:0006801) - Molecular Function: metal ion binding (GO:0046872) Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U246084	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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