Sol Genomics Network

Unigene SGN-U272799

Unigene Basic Information

Unigene ID:	SGN-U272799
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272799
mRNA sequence:	Length: 1495 bp

>SGN-U272799 Solanum tuberosum #4 (10 members)
GTCGGAAGAACCAGTGAACACATCTGAGCAGATGGGTGTGCCTGAAATAAATACTATCATACTTTTGGACAGAGAGGTGGATATGATTAC
TCCAATGTGTTCACAGTTAACATATGAAGGGCTGTTGGATGAGTTTCTTGGTATCAATAATGGTGCTGTGGAACTAGATTCATCTATTAT
GGGTGTCCAGCAAGAAGGCAAGAAAATAAAGGTTCCTCTTAATTCAAGTGACAAATTATTCAAAGAGATACGGGATCAGAACTTTGAAGT
TGTTGTCCAGGTTCTACGTCAAAAAGCAACTTCCATGAAGCAAGATTACACAGAAATGCAGACCACGAACCAAACAGTCTCCGAATTGAA
GGATTTTGTCAAAAAGCTTAACTCATTGCCGGAAATGACAAGACACATAAATCTTGGTCAGCATTTAACTACGGTTACATCCAAACCTTC
ATTCCTTGCCCGACTTGATATGGAGCAAACTCTTGTCGAGGCTGAAAGCTATGATATATGCTTTGAGTACATTGAGGAGATGATCCATAA
GCAGGAACCACTTATTAATGTTCTACGTCTTCTCATCTTGTTCTCAATAACAAATTCAGGGTTGCCCAAGAAGAATTTTGACTATTTGAG
ACGAGAACTGCTTCACAGCTATGGTTTTGAGCATATAGCAACCTTGAATAATTTGGAGAAGTCTGGATTACTTAAAAAACAGGAGACTAA
AAGCAACTGGATAACAATTAAACGTGCTCTGCGGCTTGTAGTGGAGGATACTGATACTGCTAATCCCAACGATATCTCCTATGTCTTCTC
TGGGTATGCACCTCTCAGTATTCGCCTGGTTCAACATGCAATTCGATCTGGGTGGCGACCTATTGAAGAAATATTGAAGTTGCTGCCGGG
TCCACACTCAGATATTAAGAGGGGTGGATTTTCCAGTAGTCCATCGCTGCACTCATTAAACGGGTCTTTGCATAACTCAGACAAAGTTGT
TGATGGAAGGCGTTCTTTGGTTCTTGTTGTTTTCATTGGTGGAGTGACATCTGCAGAGATCTCTGCTCTTCGCTTCCTGAGCGCCCAGGA
AGGGATGGCATATGACATAATTGTAGCAACTACAAAAATTGTCAATGGAAGCACATTGACAGAAACATTTGTGGAGAAATTGGGATGATT
TGCTAAGACTTGTTTGGTCGATTATCACTGGGAAATCTTAGCTGCTTGCGCAATAGGAACCCATAGTTTTCAGTGCTGCATTTTTATATA
CATGTGAGAAGATCAAGTAGACTTATCGTTCCTAAGATATTCCTCTCGTGGCCATTTGTCAACATCATTTCTGCACGGATTTGTAACGAA
CACAACTATGTTATCTTTATTAAGGTTTTGGCTAAGAACGCTCTGTGTGCTTCAAGTTGTAGCAAGATTGAAGTGTGATCAGTTTGTTAT
CTAAATTATGTTTGGTTCTTTTGAGCAATTTAAGGGAACATGCAGCCTATATTTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2964	GidA_sub FlaC_arch Sec1-like Ribosomal_L29 HPr_SerP_S DUF498	6
2	25707	GidA_sub FlaC_arch Sec1-like Ribosomal_L29 HPr_SerP_S DUF498	6
5	61316	GidA_sub FlaC_arch Sec1-like Ribosomal_L29 HPr_SerP_S DUF498	4
1.1	101371	F-box associated type 1	575
2	121190	Sec1-like protein - Biological Process: vesicle docking during exocytosis (GO:0006904) - Biological Process: vesicle-mediated transport (GO:0016192)	7
5	132712	Sec1-like protein - Biological Process: vesicle docking during exocytosis (GO:0006904) - Biological Process: vesicle-mediated transport (GO:0016192)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U246915	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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