Sol Genomics Network

Unigene SGN-U272895

Unigene Basic Information

Unigene ID:	SGN-U272895
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272895
mRNA sequence:	Length: 1588 bp

>SGN-U272895 Solanum tuberosum #4 (9 members)
GGAAACCTCTCCGTGCCGAATCCTGAATTTTTCTTTCCGAATAATTCACCACCAAACAACAATAATAAGAGATCATCATCACACATCATT
GCTGTTATCACTGCAGTGGCTGTTATTAGCGGAATTGCTCTGCTTTCAATTCTCTGTTTCTTAATTTTCCGGCGGTGGAAAAGGGGAAAA
GAACTTCATACAAGCGTTACAAAGTCATCATGGATCCCTTTGTCAATTACATCGAACTCAACCCAAAGAACCGGCGGCTCAGGCTCATCA
GCGCTACCATCCGATCTGTGCCGACACTTTTTACTAGAAGAGATAAAAACAGCAACATGCAATTTTGATGAAAAATTTGTGATTGGCTAT
GGAGGTTTTGGTAATGTATACAAAGGGTACATAGACAACGGCGCAACCATAGTTGCAGTCAAGAGATTGAATCCTTCATCAAAGCAAGGA
GTCCACGAGTTCGAAACAGAGATTCACATGTTGTCAAAGCTAAGGCATGTGCATCTGGTATCCTTAATTGGTTATTGTGATGATAACAAT
GAGATGATCTTGGTTTATGATTACATGTCTCATGGAACTCTTCGTGATCACTTGTACAAAACTGATAATGCTCCACTTCCATGGAAGAAA
CGCCTTGAGATTTGCATTGGCGCAGCAAAAGGATTGCATTATCTCCATACAGGTAAAAAGGATATCATTATTCATCGAGATGTGAAGTCA
ACCAACATTTTATTGGATGATAAATGGGTTGCTAAGGTTTCAGATTTTGGGTTATCCAAAATCGGTCCACTTAGTGGATCAGGGAAAACC
CATGTTAGCACTGTTGTGAAAGGAAGCTTTGGATATCTAGATCCTGAATACTATAAGCGACAACAATTGACAGAAAAATCTGATGTGTAT
TCTTTTGGGGTGGTGCTATTCGAAGTGTTGTGCGCTAGACCAGCATTAATTCCTAACATGCCGAAAGGGCAAGTGAATTTGGCTGATTGG
GCTTGTAGGAGCTGTAAAAAAGGAAATCTTCAACAAATAATTGATCCGAATTTGGAAGGGCAAATTGCGCCAGAGTGCTTAAACAAGTTT
GCAGAAGCAGCATATAATTGCTTGAAGGATCAAGGAGTCCAAAGGCCATCAATGAATGACGTTGTCTGGAATTTGGAATTTATATTAAAG
CTTCAAGATGCAGCTGATAATAGAGGTCACAAAATGGAATTGAACAGTTATCCGACTAGCCCGTCTTTCCCCTTGATTATGAATGATAAT
ACCAATATATCTACAGATGAAGGATTCGAGGCATTTTCAGGTTCACATGAAGTTGGAGGAAAATACACAAGCAGTGCTACATCCATGACC
AGTAATAGTGATGACAAATTGAAGAGTGACACTATTTTCTCTGAGATTTTGAATCCATCGGGTCGATGAGATTGTTACAACTAGTATGAT
AAATTACATATTAGTTCTTCTCTGTTTTTTTTTTCCTTTGTTGAATTTATGTCCTTATTATATATGTAGATGAATTGAAGCCATTATTCA
GAAGTATATAAGCTATAAAATAGTTTCACTAAAAAAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF288564	tbrDI2 Pto-like serine/threonine kinase	serine/threonine kinase

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1	Prot_kinase	3744
2	21970	Prot_kinase	1313
5	56291	Prot_kinase	124
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128958	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	116

Preceding Unigenes (2)

Unigene	Build
SGN-U248398	Solanum tuberosum #3
SGN-U255770	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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