Sol Genomics Network

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Unigene SGN-U272928

Unigene Basic Information

Unigene ID:	SGN-U272928
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272928
mRNA sequence:	Length: 1547 bp

>SGN-U272928 Solanum tuberosum #4 (9 members)
CTTTCTTTCTCTCTCTCTATATTGGTAAGAAAAGAATGTCGTCGGCCGGAGCAGTTGGTGGCGGAGGCGCTGCCGGAAATCAACCACAGA
ATTACCATTGCTACCAATGTGAACAGACAGTTACCATTACGCCATCACCAAATTCAGAGCTCTCATGCCCAAATTGCAACGGTACGTTTT
TAGAAGAATCGGAAACCGCACCACCTTCCAACCCTAATCCTAATACTCATCCCTTCTTCTCCGCCGCTACTACCGATGACCTACCTTTCG
GAGGTGGATTTCCGATTGTTTTCTCTTCAAACGCTGCTTCACCTGCCGGTGGTGCTGTCGGTTTTGATGATCTTTCTGCTTTATTTGGAG
GTATGGCTGGTGGTTCCGCTGCTTTACCAGGTCGATCCCCCAATCAATTTGACCCTTTCGCTTTCCTAAACAACTATTTTAGTAGTATGA
GGGGTGGGAATATTCAGTTAATCTTCGAGAATCATCCTGATGGAGGCGGTGGTGGAGCTGGTGGTGATTTTAGGATTCCGGGGAATCTAG
GTGACTATTTTCTAGGGCCTGGGCTTGAGCAATTGATTCAACAGCTTGCGGAAAATGATCCAAATCGTCATGGTACACCTCCGGCTGCAA
AGTCGGCTGTTGCTGGGCTTCCAGATATTAAGATCACTGAGGAGTTGTTGGATTCTGATTCATCTCAATGTGCAGTTTGTAAAGATACTT
TTGAACTCGGCATGGAGGCGAAGCAGATACCTTGCAAACATATATACCACAAGGATTGTATAATGCCATGGCTGGAGATGCACAATTCTT
GCCCAGTGTGTCGATATGAGCTGCCTACTGATGATCCTGATTATGAGAATAGGAAGACATCACAGCAGCAGACTGCCAATACTAGTAATA
CGCATACCAACACTAGTAACAATAATACCAACAACAACAATACTGGTGTGATGTTTGGGGGTTTAGAAGGTGGGGGAGATCAGGACAATT
CTCAGACACCTAGTACAGGGGAGAGGAGGCTTAGGATACCATTGCAATGGCTTTTCAGGGGACTTGGATCACCTGCTGAGACGAGCAACA
GTGGAGGGGCAAGCAATGATGCTAACAATCACAACAACAACAATACGAGCAACAATGCTCCTAGTGGGGAGTCTAATCCAGGTTCTGGAG
GGCAGCCGAGGCAGGAGGATCTCGATTAAAGTATGGAGTAGAGTTCTGGGGTTTTCTCCAAATCTTGCATGTTCATAGTTGTTACATTAA
GTTTCTTGTATGCTAGTATTCGAGAATTACAAGTGCCCCATCCTTGTAATATATGGGAATTTCGGAAAATAATGTTTTTGATTGTTGATC
ATTTGCTTTAAATTAGCCTCGAAGTACTTTTCTCTTGATAGTGTATAAAAAATGGTTGAAATCATCCCCATTAAATATGACCCAAGGTCT
ATAGCAAGAATATCTATGTAGAAGGGTGTTAGATGTAACTAAAGATGTGGTTGAATAAGATTTTTCCCTAGTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	10	Znf_ring	594
2	29758		2
5	66125		2
1.1	101372	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	566
2	118726	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	33
5	130579	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	9

Preceding Unigenes (2)

Unigene	Build
SGN-U251080	Solanum tuberosum #3
SGN-U254593	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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