Sol Genomics Network

Unigene SGN-U272982

Unigene Basic Information

Unigene ID:	SGN-U272982
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272982
mRNA sequence:	Length: 1659 bp

>SGN-U272982 Solanum tuberosum #4 (9 members)
TGATGATTTGGAGTTGATGGGGAGGTTGTTGGATGAGTTTGATTTGCTGCAGAGGAGGGCACAAGCTGTGGATTTGGATGTGGTGGATGT
TAAGATTAACAAGATGATGCCCGAGTTAGGATTTGCTCCAGAGGATGCAGATAGGCTTGTGGCATCATTTAGTGGTGGCTGGCAAATGAG
GATGTCTCTGGGTAAGATCTTGCTGCAGGACCCAGATTTGTTACTACTGGATGAACCGACCAATCATCTTGACCTTGATACGATTGAGTG
GCTTGAGGGTTATCTTAATAAGCAAGAAGTTCCGATGGTCATTATATCTCATGACCGAGCTTTCCTTGACCAGTTGTGTACAAAAATTGT
GGAGACTGATATGGGTGTATCTAGGACATATGATGGAAATTACTCGGATTATATTATTTCAAGGGCTGAATGGATTGAAACACAGAATGC
TGCATGGGAAAAGCAACAGAAGGAAATTGAGCAAACTAGAGATTTGATAAGTAGGTTAAGTGCTGGAGCAAACTCAGGTCGTGCATCTAC
AGCTGAAAAGAAGCTGGAGAAACTTCAGGACCAGGAACAAATTGATAAGCCATTCATAAGGAAACAAATGAAGATTAGGTTCCCCGAACG
TGAAAGAAGTGGGAGAACAGTTGTGAATGTTAAAAATCTGGAATTTGCTTTCGAGGATAAGGTTCTTTTCAAGAATGCAAACTTGACAAT
TGAGAGAGGAGAGAAAATTGCCATTATTGGTCCTAATGGGTGTGGAAAGAGCACCTTTCTTAAACTGATTATGGATTTACTGAAGCCAAC
ACGAGGTGAAGTTGTGCTTGGGGAGCACAACGTCTTACCAAATTACTTTGAGCAGAATCAGGCTGAGGCACTCGATTTGGAAAAAACTGT
CCTTGAAACTGTAGCAGAAGCTGCCGAGGATTGGAGACTAGATGATATAAAAGGACTCCTTGGACGTTGTAATTTTAAAGCTGACATGCT
TGACAGGAAGGTTTCCTTTTTGAGTGGCGGTGAGAAGGCACGTCTGTCCTTCTGTAAGTTCATGGTGACCCCTTCAACTTTGCTAGTACT
GGATGAGCCAACCAATCATTTGGACATACCAACGAAAGAGATGCTTGAGGAGGCAATTACGGAGTATCAAGGCACTGTGATAACTGTTTC
TCATGATCGGTACTTCATAAAACAAATTGTTAACAGAGTATTGGAAGTAAAAGACGGCACTTTACATGATTATGAAGGAGATTATGATTA
TTATTTGGAGAAAAACCTTGAGGCCAGGGAAAGAGAGCTTGAACGAGAGGCAGAGATCGAGGACAAGTCTCCAAAAGCTAAAGCCAAATC
CAAGATGTCAAAGGCGGAAAAGGGAAGCTCGGGAGAAACAGAAAATGCAGGCATTCCAAGCAGCAAAACAGAAGTCGAAGAAATCAAAGA
ACTCCCAGAGATGGAACTGAAATGGTTTTTTAGATGCTCCCATTTANTCCCTTTGCTCTCTGTACAAAGCTCTAGTGAGCTACATTATCC
ATCATCTTATTGTATANTATAACCAATAGATAAATATAGTAGTACTAGTTGATTATTCTTGTCAACAAGCAGTCTAATTCATAGTCTCAT
GATCTATATCCTATTTTTATGGGAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	16	ThiQ_ABC_transpt ABC_transporter Sulph_transpt1 CbiN_ATP	404
2	22352	ThiQ_ABC_transpt NtrCD ATP_GTP_A_BS Drr_ABC_transpt ABC_transporter CcmA ProV IISP Sulph_transpt1 ABC_bact_transpt Sp/ptABC_transpt CbiN_ATP ABC_transptNodI	33
5	58551	ChvA ThiQ_ABC_transpt NtrCD ATP_GTP_A_BS Drr_ABC_transpt ABC_transporter CcmA ProV FA_transporter IISP Cyc_pep_transpt Sulph_transpt1 ABC_bact_transpt SMC_C Sp/ptABC_transpt CbiN_ATP ABC_transptNodI	8
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118764	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	31
5	130333	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	11

Preceding Unigenes (1)

Unigene	Build
SGN-U247107	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer