Sol Genomics Network

Unigene SGN-U273151

Unigene Basic Information

Unigene ID:	SGN-U273151
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273151
mRNA sequence:	Length: 1676 bp

>SGN-U273151 Solanum tuberosum #4 (6 members)
TTCATCATAAAAAAAACTTGGGATATATTTATTATTATTATTAATATTCCATAAAAAAAAAATGCATAAATTGTTCGTAGCAAGGTCTGT
GAAATCTGCTTTGTTCAGAATCAAGAATCATCAGAAGCCACAATTTGCTGCGTTTTCAACTTCGTTACTCTTCGATGATACACAGAAACA
GTTTAAAGAAAGTGTGGCACAATTTGCTCAAGAGAATATTGCCCCCCATGCTGAAAAAATAGATAGAACAAACTATTTCCCTCAGGATGT
TAATTTATGGAAACTAATGGGGGATTTTAATCTCCTTGGTATTACAGTGCCAGAGGAATATGGTGGACTTGGCCTTGGTTATCTATATCA
CTGCATAGCCATGGAAGAGATTAGTCGAGCATCAGGGTCAGTTGGCCTATCTTATGGTGCCCACACGAACCTATGCATTAATCAGTTGGT
TAGAAATGGAACCCATGAGCAGAAACAAAAGTATCTACCAAAGCTAATCAGTGGTGAGCATGTGGGGGCTCTAGCTATGAGTGAACCTAA
TGCTGGATCAGATGTTGTTAGCATGAAGTGCAAAGCTGACCGTGTTGAGGGTGGTTATGTTCTGAATGGAAACAAAATGTGGTGCACAAA
TGGTCCAACGGCTCAGACGCTGGTTGTTTATGCAAAAACAGATGTCACAGCTGGTTCAAAAGGAATCACAGCATTCATTATCGAGAAGGG
AATGACAGGATTCTCTACTGCCCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACACATGTGAGCTTGTGTTTGAGAACTGTTTCGT
TCCTGAAGAAAATGTTCTGGGGCAAGTAGGAAAAGGAGTTTATGTCCTGATGTCGGGGCTCGATCTGGAAAGACTTGTTTTGGCATCTGG
TCCTGTTGGAATTATGCAAGCTTGTCTCGATGTTGTTCTCCCCTATGTTAAACAACGCGAACAATTTGGGCGAACGATTGGAGAATTCCA
ATTTGTACAGGGAAAAGTGGCTGACATGTACACATCTATGCAATCTTCAAGATCTTATCTCTATTCTATTGCAAGGGAATGTGACAGCGG
GACGATTAATACCAAGGATTGTGCTGGTGTTATACTCTCTGCTGCTGAAAGAGCAACCCAAGTTGCTCTTCAGGCTATTCAGTGCCTCGG
AGGCAATGGCTACGTGAATGAGTACCCGACTGGACGTTTTCTCCGAGATGCCAAACTATATGAGATTGGTGCAGGCACAAGTGAGATTAG
AAGAATGATAATAGGCCGTGAACTCTTTAAAGAACAATGACATTGACATAGATAGTTTATCCAGCTCGTTGGGAATATAGCAAAAATTGA
TGCACACACCCCATCTTTTCTTTTCATTTGGAATTAAAGAAAGAAAAAAAGTTAATTCCCTTTATTTTTGTGAATGAATAATGTATTAAT
TCAAGGTATTCCTATCAAATGAAAAGGATATGTAGTGAGTGTTGTTAAAAACAAGCTTGCAGTCTGAGAAATGTGGATAGCATGAAGCAT
CTCGTGTTCATGTAGGGTTTGAGAAAAGGCCACCACACTTGCGAGTGTGATGTAGGCAATCTACACTGACGTAAGCATCATGATTGATTT
TATAGAAAAGCATTTTTTGGGGGACAATAAAGAATTTTGTTTTCCTTTAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ivd2	isovaleryl-CoA dehydrogenase; ivd2 gene

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	251	Acyl-CoA_dh_M Acyl-CoA_dh_C	62
2	24591	Acyl-CoA_dh_M Acyl-CoA_dh Acyl-CoA_dh_N Acyl-CoA_dh_C	8
5	58624	Acyl-CoA_dh_M Acyl-CoA_dh Acyl-CoA_dh_N Acyl-CoA_dh_C	8
1.1	101614	Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase C-terminal-like	58
2	120769	Acyl-CoA dehydrogenase N-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase C-terminal-like Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type 1 - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	8
5	131024	Acyl-CoA dehydrogenase N-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase C-terminal-like Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type 1 - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U247260	Solanum tuberosum #3
SGN-U260283	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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