Sol Genomics Network

Unigene SGN-U273244

Unigene Basic Information

Unigene ID:	SGN-U273244
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273244
mRNA sequence:	Length: 1544 bp

>SGN-U273244 Solanum tuberosum #4 (9 members)
CTCGTTATTTCCTTGNCTGCAATTTTACTCATTTGCCGGCCTCGACTTCACTTTCACTATCCCCAAGGCTTCCTGCTTCCATCTTCTCGC
CTTTGCTCATCCCCATCTCAGGGAGGAAGAAGTTATTCTTGCGTGCTGAGAATCTTGATTGTGAGAGCATGGAACAAATGGATTTGAAGA
AGGAATTTCCTGAATTAAAAAAGGATCTATACCCCTCTATAGAGCCATATTGTACTGGGTTTTTGAAAGTTTCGGACCTTCATACTATAT
ACTGGGAGCAGTCAGGAAATCCTAATGGCCGTCCAGTAGTGTTTTTCCATGGAGGCCCTGGAGGTGGGACTTCACCCAATAACAGGAGGT
TCTTTGATCCTGTCTTCTATCGAATTATTCTATTTGATCAGAGAGGTGCGGGTAAAAGTAAGCCTCATGCTTGCTTGGAGGAGAACACAA
CATGGGATCTCGTTGGGGATATTGAAAAATTAAGAGAGCACTTAAAGATTCCGGAATGGCAGGTATTTGGTGGCTCATGGGGAAGCACTC
TGGCTCTTGCATACAGCATATCACATCCTGAAAAGGTTACTGGGATCATTCTTAGAGGGATATTTTTGTTGCGGAAGAAAGAAATTGACT
GGTTTTATGAGGGTGGAGCTGCTGCAATATACCCTGATGTTTGGGAGCCATTCAGAGATCTGATTCCAGAGGAAGAAAGGAAGTGTTTTG
TCAAGGCTTACCATAAGAGATTAAATTCAAATATCCTAGAAACACAGTATGCAGCAGCTAGGGCATGGACTAAATGGGAAATGATGACCT
CTCATCTTCTCCCTAATGAAGAGAACATAAAGAGAGGAGATGATGATGATTTCTCCTTGGCATTTGCAAGGATTGAGAACCACTACTTTA
TCAACAAGGGATTCTTCTCTTCAGATTCTTTCCTTCTAGATAATGTTGAAAAGATAAAGCATATCAAAACAATAATTGTTCAGGGAAGAT
ATGATGTTTGCTGTCCAATGATGTCAGCATGGGATCTTCATAAAGCTTGGCCAGAGGCAGAGTTCATTGTTGTCCCAGGAGCAGGTCATT
CGGCAAATGAACCAGGAATAGCAGCAGAACTTGTTGCGGCTAATGAAAAACTGAAAAATGTCCTTGAAGGAGTTTCTTGAGTGCAAGTGC
CTACTAGTCATTGACTTTAGACTTTGGCATGGATGTTTGTGAGAGTTAGTATTGTAGATCCTTGCATTCCAGTATTCTAGGTTTGAGTCT
CTTCACAGATGAACTAAGAGCAGCACCACATGTGTGGAAGAAAGAAAGTTTGCCCAAAAACAATGCCACGAGTTCTCTCCCCTTTTATAT
ACGACTATTGGACGAGGCTAATTGAAAGAGTTCATTTGTGACATCCCATGTGTGGGGGCATTATTGATACTTCCTACTCATGTTATGTGC
TGCTTTATATCCTAAACCCCAACAGCTACACTTGATGCTAACTTTAGCCCCTTTCTCTATCTATATAATTATTATTCCTCTCCTCGATGC
ACCGAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2205	A/b_hydrolase Ser_estrs Pept_S33 Pept_S33_TRI_F1 Peptidase_S33 AB_hydrolase	8
2	24441	A/b_hydrolase Ser_estrs Pept_S33 Pept_S33_TRI_F1 Peptidase_S33 AB_hydrolase	8
5	58475	A/b_hydrolase Ser_estrs Pept_S33 Pept_S33_TRI_F1 Peptidase_S33 AB_hydrolase	8
1.1	103829	Peptidase S33 proline iminopeptidase 1 - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: prolyl aminopeptidase activity (GO:0016804) Esterase/lipase/thioesterase - Molecular Function: catalytic activity (GO:0003824) Peptidase S33 prolyl aminopeptidase - Molecular Function: aminopeptidase activity (GO:0004177) - Biological Process: proteolysis (GO:0006508) Alpha/beta hydrolase fold-1 Alpha/beta hydrolase - Biological Process: aromatic compound metabolism (GO:0006725) - Molecular Function: hydrolase activity (GO:0016787)	5
2	122264	Alpha/beta hydrolase fold-1 Peptidase S33 prolyl aminopeptidase - Molecular Function: aminopeptidase activity (GO:0004177) - Biological Process: proteolysis (GO:0006508) Alpha/beta hydrolase - Biological Process: aromatic compound metabolism (GO:0006725) - Molecular Function: hydrolase activity (GO:0016787) Esterase/lipase/thioesterase - Molecular Function: catalytic activity (GO:0003824) Peptidase S33 proline iminopeptidase 1 - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: prolyl aminopeptidase activity (GO:0016804)	5
5	132466	Alpha/beta hydrolase fold-1 Peptidase S33 prolyl aminopeptidase - Molecular Function: aminopeptidase activity (GO:0004177) - Biological Process: proteolysis (GO:0006508) Alpha/beta hydrolase - Biological Process: aromatic compound metabolism (GO:0006725) - Molecular Function: hydrolase activity (GO:0016787) Esterase/lipase/thioesterase - Molecular Function: catalytic activity (GO:0003824) Peptidase S33 proline iminopeptidase 1 - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: prolyl aminopeptidase activity (GO:0016804)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U253479	Solanum tuberosum #3
SGN-U261595	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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