Sol Genomics Network

Unigene SGN-U273261

Unigene Basic Information

Unigene ID:	SGN-U273261
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273261
mRNA sequence:	Length: 1441 bp

>SGN-U273261 Solanum tuberosum #4 (9 members)
AATAAATAAACAAACAATTATTAGCTCATTGTTTCTCCTTCTTTCATTGCTTCAACTGTCCCCTAAATTATATCTATAGATAGTATATAG
TAATAAATCATAATGGGCAGCCCATGCTATTCCGCTTGTACTATCCAATCATTGAACCCCACGTGTCCTTCATCTTCTTCCTCCTCTGTT
ATCTTCGCTCTTCATAAACCCCAGATTCACAGTAATATTATTCAAAATTATACTAGGAGAAGAATCATTACTTGTAGTAGTAATAGTAGA
AGAAGAATGGCTAGTGTTGCTGCGATGAATGTTGGGTCTTCATCAGTAGAAGTTGGAATACAGAATCAACAAGAGTTGAAAAAAGGAATT
GCAGATTTATATGATGAGTCTTCTGGGATTTGGGAAGATATTTGGGGTGACCATATGCATCATGGATATTATGAACCTCAGTCATCTGTG
GAACTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTGAAAAGGCGCTAAGTTTTGCTGCTATTTCTGAAGATCCAGCGAAGAAACCA
ACGTCCATAGTTGATGTTGGATGTGGCATTGGTGGCAGTTCTAGGTACCTTGCAAAGAAATATGGCGCTACAGCTAAAGGTATCACTTTG
AGTCCTGTACAAGCAGAGAGGGCTCAAGCTCTTGCTGATGCTCAGGGATTAGGGGATAAGGTTTCATTTCAAGTAGCAGACGCCTTGAAT
CAGCCTTTTCCAGATGGGCAATTCGACTTGGTTTGGTCCATGGAGAGTGGAGAACACATGCCAAACAAAGAAAAGTTTGTTGGCGAATTA
GCTAGAGTGGCAGCACCAGGAGGCACAATCATCCTTGTCACATGGTGCCACAGGGACCTTTCCCCTTCAGAGGAATCTCTGACTCCAGAG
GAAAAAGAGCTGCTAAATAAGATATGTAAAGCCTTCTATCTTCCGGCATGGTGTTCCGCTGCTGATTATGTGAAGTTACTTCAATCCAAC
TCTCTTCAGGATATTAAGGCAGAAGACTGGTCTGAGAATGTTGCTCCATTTTGGCCAGCAGTCATAAAGTCAGCACTGACATGGAAGGGC
TTCACATCAGTACTACGCAGTGGATGGAAGACAATCAAAGCTGCACTGGCAATGCCACTGATGATTGAAGGATACAAGAAAGGTCTCATC
AAATTTGCCATCATCACATGTCGAAAACCTGAATAATTCTTCGCGTAGCTACTGATTAATAAACATCTATGGATCTTGGAAGAAACATAA
ACTATTTATTAGGTACAGAAAATGCAACATTGAATGAACTCTGGATTGCAAGCTGAAGAAATTGCCACATTTGCTACAATAGCTTTAATA
ATCCATTTAACATGTTGTAGTGTGAAATTGCCACATTGTACTGTACCAATCATCAAAAGAGTATCAAGGTATCTAGTTCTAAGAAGAAAA
A

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tmt	gamma-tocopherol methyltransferase	gamma-tocopherol methyltransferase

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	154	SAM_bind	88
2	23881	SAM_bind Ubi/men_trans UbiE/COQ5_Metrf Methyltransf	10
5	58197	SAM_bind Ubi/men_trans UbiE/COQ5_Metrf Methyltransf	9
1.1	101467	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	119
2	122185	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Methyltransferase type 11 Generic methyltransferase - Molecular Function: methyltransferase activity (GO:0008168)	5
5	133348	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Methyltransferase type 11 Generic methyltransferase - Molecular Function: methyltransferase activity (GO:0008168)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U248673	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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