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Unigene SGN-U273860

Unigene Basic Information

Unigene ID:	SGN-U273860
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273860
mRNA sequence:	Length: 773 bp

>SGN-U273860 Solanum tuberosum #4 (6 members)
GGCTCCTCTCTCTCTAGCTCAGGCATTCAGTCGTCGCCCTTTTCAGGCGTATTTGCACCTTCTCCGATCACATTTCCAGCCACTCGTCAA
CGTGTCTCATGCCAGGCCACCTCTCCGGCAACATCTCCTCCTTCGTCCGTTAATGTAAATGCTAGTCAGAAGGACTTTTTGCACATCAGC
GATTTTGACAAATCAACTCTTTTGAACATCTTGGATCGAGCCAAAGAGGTCAAACAGCTTATAAAATCAGGGGAGAGGACATATCTCCCA
TTTAAAGGTAAAACTATGGCGATGATCTTTGCTAAGCCATCCATGAGGACACGGGTTTCCTTTGAGACAGGGTTTTACTTGCTTGGTGGG
CATGCTATATACCTGGGACCAGATGACATACAGATGGGTAAGCGGGAAGAAACTCGTGATATTGCTCGTGTTCTGTCTCGCTATAATGAT
ATCATTATGGCTCGAGTTTTTGCTCATCAGGTACGCTGGTGAGTTTTTCTGTTTTGACTTCTTCCTGGTACATGGTGAGTTTCCTATTTT
GGTTTCTTCCTGGTACATGGTAAAGCACTGCTAACACTCTTGTTTGTGCTAGTTGTCCAGTCGATGCTTCTGTTTCCTCTGTTAAAATCC
TCTCTTCATAGCATTGTCCCTTCTAAGTATTTGGTTGCCCCTTTTAATAAGTTGGAACAATAGTTTTTTGATCTTTTCTGTTGGAGCTGA
ATAGCGGATCCATCTTTTATCTAATATCTTACCAGTAAATACAGTTGAATGAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	955	Asp/Orn_COtranf Orn_carbtransf OTCace_P OTCace_O Asp_carbmltransf	20
2	23268	Asp/Orn_COtranf Orn_carbtransf OTCace_P HAD_SF_IB_hyp1 OTCace_O Asp_carbmltransf	14
5	57335	Asp/Orn_COtranf Orn_carbtransf OTCace_P HAD_SF_IB_hyp1 OTCace_O Asp_carbmltransf	14
1.1	101375	Chaperonin Cpn10 - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) GroES-like	508
2	119683	Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase Asp/Orn-binding region - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Ornithine carbamoyltransferase - Molecular Function: ornithine carbamoyltransferase activity (GO:0004585) - Biological Process: amino acid metabolism (GO:0006520) - Cellular Component: ornithine carbamoyltransferase complex (GO:0009348)	13
5	130014	Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase Asp/Orn-binding region - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Ornithine carbamoyltransferase - Molecular Function: ornithine carbamoyltransferase activity (GO:0004585) - Biological Process: amino acid metabolism (GO:0006520) - Cellular Component: ornithine carbamoyltransferase complex (GO:0009348)	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U246775	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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