Sol Genomics Network

Unigene SGN-U274178

Unigene Basic Information

Unigene ID:	SGN-U274178
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	274178
mRNA sequence:	Length: 1145 bp

>SGN-U274178 Solanum tuberosum #4 (7 members)
GGACTGGTGGGAGCTGAAATTTAACAAACAAACTGGTGGTATAGAGGGATGGAAGGTTAATGGAGTTTCAATAATGAATAAAGGCATCTA
TCCATGCTTTTGGAGAGCACCAACAGATAATGACAAAGGGGGAGGGCCAAAGAGTTACTTGTCTAGGTGGAAGGCTGCTAATCTTGACAA
GGTAATCTTTGTGAACGAAAGCTGCTCTGTGGAAAGTACGAACAGTCACGAAGTGAAAATATCAGCTACTTATCATGGCATAGCAAAACC
AGAGGAGAAAACTCCCTCAAATGCGGAAACTTCTAATATTCTCTTTAAGGTTGGCATGACACTTTTGATATATGGTTCAGGAGATGTTGT
GCTAGAGTGCAATGTAAATCCATGTCCTGATCTTCCACCTTTGCCACGAGTCGGTGTTGAATTTCAATTGGATTCAACTGTAGACCAGGT
TAAATGGTATGGAAGGGGACCATTTGAATGTTATCCAGACCGGAAATCTGCTGCTCATTTAAGTATTTATGAGCTATCCGTAGGTGAAAT
GCATGTGCCATATGTTGTTCCCGGGGAGTGCTCAGGCAGAGCAGATGTTAGATGGGTGACATTTGAAAATAAAGATGGAGTGGGACTTTA
TGCTTCCACATATGGAGGATCTCCACCCATGCAAATGAATGCAAGCTACTACTGCACCTCTGAGCTCGATAGAACTACACACAATGAGGA
TCTCAGGAAAAGTGAAAACATCGAGGTGCATCTTGACCACAAGCACATGGGTTTGGGCGGAGACGATAGCTGGTCCCCTTGTGTTCATGA
CGAATATCTTGTTCCTCCCGTACCATACTCTTTCGCCATCAGGTTTTTCCCAAAAACTGCAGCAACCACTGGGTATGATATCTACAAGTC
CCAGTTTTCTGAAGAGTGATTATTGATAACTTCTGTACTTATTGTCTACTTGGTTCACTTTTTAGTATGTGGAATTCTTCAAATTTGTAA
CTTTGGTTAAAATAAATCAAGTGAAAAGCACTTTTAGAGTGCAGATCCTTTAACTTGAAGAACATAATTATTATTATTTCATATAAATTA
AAGTCTTGTTTGCTCAAGTAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	2

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	4908	Glyco_hydro_2Ig Glyco_hydro_2TIM Glyco_hydro_42C Glyco_hydro_2SB Ig-like Glyco_hydro_2 Glyco_hydro_42N	3
2	29178	Glyco_hydro_2Ig Glyco_hydro_2TIM Glyco_hydro_42C Glyco_hydro_2SB Ig-like Glyco_hydro_2 Glyco_hydro_42N	3
5	87951		1
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	123566	Galactose-binding like Glycoside hydrolase family 2 immunoglobulin-like beta-sandwich - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 2 sugar binding - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 2 TIM barrel - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Galactose mutarotase-like Glycoside hydrolase family 2 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 42 domain 5 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	4
5	133740	Galactose-binding like Glycoside hydrolase family 2 immunoglobulin-like beta-sandwich - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 2 sugar binding - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 2 TIM barrel - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Galactose mutarotase-like Glycoside hydrolase family 2 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 42 domain 5 - Molecular Function: beta-galactosidase activity (GO:0004565) - Biological Process: carbohydrate metabolism (GO:0005975) - Cellular Component: beta-galactosidase complex (GO:0009341)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U250607	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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