Sol Genomics Network

Unigene SGN-U274849

Unigene Basic Information

Unigene ID:	SGN-U274849
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	274849
mRNA sequence:	Length: 882 bp

>SGN-U274849 Solanum tuberosum #4 (6 members)
TATGTCTAATTCTCACTAGATCTATCATACATTTCTTCATTCATTCTTTCTAATTTTATTACTATTCTTTAAGCATTGCTCCAATGGGGA
ATGTTGCACTTTTCCATTTGATTTGTGGAATCTTCATTTTTTGGAGTGTTTCTGTGGTGAAAGCAGAGGATACTTATAAATATTTCACAT
GGACTGCTACTTATGGAACTCTTTCTCCTCTTGGTGTTCCTCAACAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTCGACC
TTGTTACAAATGACAATGTAATCCTCAATCTGATTAATAAATTGGATGAGCCTCTTCTGTTGACATGGAATGGAATCAAACAAAGAAAGA
ATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTG
GAAGTTACACATACTTCCCTTCAACTGAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTGATCTCAG
TTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGCCACAAGGTATTGAGGCAAATATTGGACT
CAGGGAGGTCTCTTCCTTATCCAAATGGCCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGAAAGACATATATGT
TCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGGTTGAAGGATCCCACG
TCTTGCAGAACTTCTATGATTCTCTTGATGTCCATNGTGGTCAATCTATGTCAGTCCTTGTCACGTTGGATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	69	Cu-oxidase CopA	171
2	22032	Cu-oxidase CopA	115
5	56295	Cu-oxidase CopA	109
1.1	101438	Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507)	162
2	118466	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	111
5	128966	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	105

Preceding Unigenes (1)

Unigene	Build
SGN-U248248	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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