Sol Genomics Network

Unigene SGN-U275465

Unigene Basic Information

Unigene ID:	SGN-U275465
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	275465
mRNA sequence:	Length: 1252 bp

>SGN-U275465 Solanum tuberosum #4 (6 members)
CTCAAACGTGTCCAATCCTTATCCTTTTTATTTTTTCAAGAATCGAATTGGGTATTTGTAAAACATCTAAAGATTGGATTTTTTTTCACT
GTGTAGAATTTGGTTTTGATCTGAGAGTAAGAGAGATGGAGGGTGTAGATTATTTGGCTGATGAGAGGAAGAAAGCTGGATTTGATGTGG
ATGAGATGAAGATTGTTTGGGCTGGTTCTCGTCATGATTTTGAACTTACAGATCGTATCTCTAAGCTTGTTGCTAATGATCCTGGCTTCA
GTAAGGAGGGAAGAACTATGCTTCCTAGGAAAGAGCTATTCAAGAACACTCTAAGGAAGGCAGCATATGCATGGAAACGGATCATTGAAC
TTCGTCTATCTCAAGAGGAAGCCACTATGTTAAGGCGTTACGTAGATGAGCCTGCTTTTACTGATCTTCATTGGGGAATGTTTATACCTG
CCTTAAAAGGACAGGGCACAGATAAACAGCAGGAAAAGTGGCTGCCGTTGGCTTACAAGATGCAAATAATTGGCTGTTATGCTCAAACTG
AACTTGGTCATGGGTCCAATGTGCAAGGCCTTGAGACCACTGCCACATTTGATCCTCAAACAGATGAATTTGTCATTCATAGTCCAACAT
TGACGTCAAGCAAGTGGTGGCCTGGTGGATTGGGTAAAGTGTCTACCCATGCTGTTGTGTATGCTCGTCTTATAACAGATGGTAAAGACT
ATGGGGTTAATGGTTTTATTGTCCAACTACGGAGCTTGGAGGACCACAAACCTCTTCCAGGTGTTACTGTTGGAGACATTGGAATGAAAT
TTGGGAATGGAGCATACAATTCCATGGATAATGGGGTGTTAAGCTTTGATCATGTGCGCATTCCAAGAGATCAAATGTTGATGAGGGTTT
CACAAGTTACAAAGGAAGGAAAATATGTTCAATCTGATATTCCCCGACAACTTCTTTATGGGACTATGGTATATGTACGGCAAACAATTG
TATCAGATGCTTCCCTTGCAATGTCTCGGGCTGTGTGCATTGCAACCAGATACAGTGCCGTTCGTAGACAATTTGGCTCTCAGAATGGTG
GACAAGAAACTCAGGTGATTGACTACAAAACTCAGCAAAACAGGCTCTTCCCCTTGTTGGCTTCTGCATATGCCTTCAGAATTGTTGGTG
AGTGGCTGAAATGGTTGTACACTGATGTTACCCAAAGACTTGCAGCAAATGATTTCTCAACATTGCCTGAGGCACATGCATG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	251	Acyl-CoA_dh_M Acyl-CoA_dh_C	62
2	24049	ACOX Acyl-CoA_dh_M Acyl-CoA_dh_C	9
5	58103	ACOX Acyl-CoA_dh_M Acyl-CoA_dh_C	9
1.1	101614	Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase C-terminal-like	58
2	119591	Acyl-CoA oxidase C-terminal - Molecular Function: acyl-CoA oxidase activity (GO:0003997) - Cellular Component: peroxisome (GO:0005777) - Biological Process: fatty acid beta-oxidation (GO:0006635) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	14
5	130957	Acyl-CoA oxidase C-terminal - Molecular Function: acyl-CoA oxidase activity (GO:0003997) - Cellular Component: peroxisome (GO:0005777) - Biological Process: fatty acid beta-oxidation (GO:0006635) Acyl-CoA dehydrogenase C-terminal-like Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U248406	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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