Sol Genomics Network

Unigene SGN-U275780

Unigene Basic Information

Unigene ID:	SGN-U275780
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	275780
mRNA sequence:	Length: 1147 bp

>SGN-U275780 Solanum tuberosum #4 (6 members)
AAAAATCAGGGCAATTAGGGATATGCTAGGAAAATCAACTGATAGGGCTAGGCCAGCTATGCCTGTAGAGATCGAAGGACTCAAGGGGCT
TCCAATGGCTGGTGATGACATTATTGTCGTTCACTCTGAGGAAAGGGCAAGGATGCTTAGCGCAGGGAGGAAAAAGAAATTTGAAAAAGA
TAGACTTGGGAGGAAGATGGACGCAGAAAAATTAGGATCTCTAGTATCAGAATCTAATTTAGAAGATGAAGAAGGTGAGGTTGAAGAGAA
GCCCAAGAGGGTTGAAATGACAATAATAGTAAAAGCAGATGTTCAAGGAACTGTCCAAGCTGTTACAGACTCATTGAAGAGTTTGGATAG
TCCTCAGGTTTTCGTGAATATTGTCCATGGAGGTGTTGGGCCTATTTCTGAGTCCGACGTGGATTTAGCACAAGCTTGTGGTGCATTTAT
TGTTGGGTTCAGCATACCAACTCCACCTGGTTCAATAAATCAAGCAGCAAATAAAGCTGGCATTAAGATAAAAATCCATCGTGTGATCTA
TCATCTTCTAGAGGATATTGGCAACTCTATTGTTGAAAAAGCCCCCGGTACATTTGAGACGCAGGTTTCAGGCGAGGCACAGATACTGAG
CATATTTGAGCTTAAAGGAAGGAGCAAAGCTAAGGGAGATGACGTCAAGATAGCTGGTTGTCGTGTGATAGATGGCAGACTCATCAGATC
ATCAACAATGAGGCTTCTTAGAAGTGGTGAGGTTGTTTTCGAAGGATCTTGTGCATCGCTAAAGCGTGAGAAGCAGGATGTTGAAGCAGT
TGGAAAGGGGAATGAATGTGGACTTGTGATTCAAAACTGGGATGACTTTAAGGTTGGAGATGTCATCCAATGCTTGGAGCAAGTCAACAG
AAAACCCAAATTTATTTCATCTCAAAGTGGTGCTGTCAGAATAGAATGTTGATAGAATTTTCACTAAGAAATGAGCAATCTTTTTTTTGG
CAATGTAGAAACCTTTGCCTCATTAATCTTCTATTTATTCTTATTAATAATACTATTGAGTAGAAATAAAACAATTTTGCTGTATAAAAC
TCTATATTGAACTCTTTACACTGAACAACAACAATTATACAGTGTATGGTCATAGCTTTTGTTCTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	25109	EFTU_D2 Cons_hypothATPbd Small_GTP Ras_trnsfrmng LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TIF_aIF-2 TEF_SelB IF2_N EF-Tu ArgK	7
5	61342	EFTU_D2 Cons_hypothATPbd Small_GTP Alpha_E2_glycop Ras_trnsfrmng LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TIF_aIF-2 TEF_SelB IF2_N EF-Tu ArgK	4
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	120922	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412) Initiation factor 2 - Molecular Function: translation initiation factor activity (GO:0003743) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational initiation (GO:0006413)	7
5	133792	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412) Initiation factor 2 - Molecular Function: translation initiation factor activity (GO:0003743) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational initiation (GO:0006413)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U249887	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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