Sol Genomics Network

Unigene SGN-U277467

Unigene Basic Information

Unigene ID:	SGN-U277467
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	277467
mRNA sequence:	Length: 1491 bp

>SGN-U277467 Solanum tuberosum #4 (4 members)
AGGATAGCTAAAAATGGTGAGAAATAGGAGAGAAGAATTATACGTTACCGTTCCCAGCCTTTTCCGATGTCCGATATCAATGGACGTAAT
GAAGTCACCGGTGAGTCTCTGCACCGGCGTCACTTACGATCGGAGTTCCATTCAAACTTGGCTTTCACAAGGTCATAATACTTGTCCCGC
CACTATGCAAATCCTTCCGTCTACCGATTTCACACCTAACCTCACTCTCCGGCGGCTTATCAACGTCTGGATTCAGCATCAGCCGGCGAG
CTCACCGGGATCCACAACGCCGTCTTCATCCTCTGTTACAAAGTCGGAAGTTGTTGAAATTGTCGAAAGTCTCAACGGCGAGGTCGATAG
GTTGAGTTCCTTGGCGAAGATTGTGGAATTTGTTAAATGTTCTGGTGAAAACAGGAGGTTTTTTGTGAATATGAGTGATGCGATTGTGAG
TGTTGTTGGAGTTTTGGTGGATTGTGATGTGGTTGAGGTTTGTGAAGCGGTTGTTGCGGTTTTGGATTTGGTTGTATCGGAAAATGAAGT
GAAGGAGCAGTTGAACAAAGAGATTTTGAAGAGCGATAGGAAATTTCTCCCTAAGTTTCTTTTGATTCTTCGAAAAGGAAAGTTGAGTTC
GAGGATTCAAACCGCTCGGATTCTAGAATTCATCGCATTAGACGCCGATTCGCAGCGAGAAATGATCGAGGAGCAAGGTTTACTCTACGA
ATTGCACGTATTCACTAGCACGGAGACGAACCGGTTCGCGATCGAAGCCGGTTTATCAACTCTTATCGCGGTCTCAACCACCAGACCGGC
GAAAAAAGAGCTAGTCCGGTTCGGAATTGTACAAACCATCGGGAAAATCCTTAGCGGTTCGGAAACCGCTCGGGCGGTGGTGGAGAAGTC
ATTGAAGCTGTTGGAAACAGTAGCGACGTGTACGGAAGGCAGGGCGGCGATAGTTAAAGGCGAAGAGTGCATGTCGGCGATAGTTACAAG
GCTGATGAAGAGCTCGAAAGCAGCGACGGAGCACGGGGTGACAGTACTGTGGAGCGTGTGCTGCTTGTTTCGTGATACGGCGGCGCGTGA
TGTGGTGGGAAAGGCAAATGGGCTAACTAAAGTGTTGCTGGTAATGCAGAGTGACTGCTCCGCGGCGGTACGGCAGATGTGTGGGGAATT
AGTCAAAGCATTGCGCGTGGTGAATAATAAACATAAGAATTATTCAAAGTCGTGTTTGGCGAGTTATGATACCAAAACTACTCACATTAT
GCCCTACTGAAAATATAATAAATACCACTCTTAATTTGTGTTGACTAACCATCCATACCAAAAGAATCAAACACTAGTTTTTATTTTCTT
TAATTAATAATTATTACACCATTTGTTTGTTTATAGAAATAGAATTAGGTAGTTTCATGCTGTAAATCAAAAGGAATTCTGCTAATGATA
CAAATGACATCAAACTGTTAGCTAAATAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
phor1	photoperiod responsive protein 1

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (4)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	21	Armadillo	362
2	26427	Znf_modRING Armadillo UPF0137	5
5	61323		4
1.1	101373	Armadillo-like helical - Molecular Function: binding (GO:0005488)	564
2	121273	Armadillo-like helical - Molecular Function: binding (GO:0005488) U box - Cellular Component: ubiquitin ligase complex (GO:0000151) - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein ubiquitination (GO:0016567)	7
5	134231		4

Preceding Unigenes (1)

Unigene	Build
SGN-U251753	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
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