Sol Genomics Network

Unigene SGN-U277730

Unigene Basic Information

Unigene ID:	SGN-U277730
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	277730
mRNA sequence:	Length: 1729 bp

>SGN-U277730 Solanum tuberosum #4 (156 members)
CACTTTTGCTGTGATTCCCTTCTGTCTGCTGTGCCGCAATCTCCTAATTTCTCTTCTCTAAGTCTTTAAGTAACTCAAGATGGGTAAAGA
GAAGATTCACATCAGTATTGTGGTCATTGGTCATGTCGACTCTGGTAAGTCGACCACAACTGGTCACTTGATCTACAAGCTTGGTGGTAT
TGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAACTTAA
GGCTGAACGTGAGCGTGGTATCACTATTGATATTGCTTTGTGGAAGTTTGAGACCACTAAGTACTACTGCACTGTGATTGATGCCCCCGG
ACACAGGGACTTTATCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGTGCTGTCCTCATTATTGACTCCACCACTGGTGGTTTTGA
AGCTGGTATCTCTAAAGATGGTCAGACCCGTGAACATGCATTGCTTGCTTTCACCCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAA
GATGGATGCTACCACCCCCAAGTACTCCAAGGCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGTTACAA
CCCTGACAAAATCCCATTTGTCCCCATCTCTGGTTTTGAAGGAGATAATATGATTGAGAGGTCTACCAACCTCGACTGGTACAAGGGACC
AACCCTCCTTGATGCTCTCGACCAGATTAATGAGCCCAAGAGGCCAACAGACAAGCCACTCCGTCTCCCACTTCAGGATGTTTACAAGAT
TGGTGGTATTGGAACTGTCCCAGTTGGTCGTGTAGAGACTGGTGTGATCAAGCCTGGTATGGTTGTGACCTTTGGCCCTACTGGTTTGAC
AACTGAAGTCAAGTCTGTTGAGATGCACCACGAAGCTCTTCTGGAGGCACTCCCTGGTGACAATGTTGGGTTCAATGTTAAGAATGTTGC
TGTTAAGGATCTGAAGCGTGGTTTTGTTGCCTCAAACTCCAAGGATGACCCAGCTAAGGGGGCAGCCAGTTTCACTGCCCAGGTCATCAT
CATGAACCATCCAGGACAGATTGGAAATGGATATGCTCCAGTGCTGGACTGTCACACATCCCATATTGCTGTCAAGTTTGCTGAGATCTT
GACTAAGATTGACAGGCGTTCTGGTAAGGAACTCGAGAAGGAGCCTAAGTTCTTGAAGAACGGTGATGCTGGTATGGTTAAGATGATTCC
CACCAAGCCCATGGTTGTTGAGACCTTCTCCGAGTACCCACCATTGGGACGTTTTGCTGTGAGGGACATGCGTCAAACTGTTGCTGTTGG
TGTTATCAAGAGTGTTGACAAGAAGGACCCATCTGGAGCTAAGGTCACCAAGGCTGCTCAGAAGAAGAAATGAATGGTGCAGTTCAACTC
TGGAGTACCCAGAGATATCGATATCTACTATAATAAAGTGTGTTACGAAAACTTGCTATGCTTTACTCTTCCTGTTCATGTTCAGTTTTT
TATGTTGTTGTTGGGTTCTTGTTTTCTGCCTTGTATGTCAGGTATCCTTTCCCAGAACTGGGTGCTTGACAGACGGTGGCAAAATACATA
GTTCCAGTCGTTTGGTTTTTCTTTAGAGGTGTCTTGGTCCATCCAAGACGTCTCTAAAGATATGTTTATTTGTGTTTCTTATAATACGTA
AATCGTACTTTTCTGTCTT

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ284495	elongation factor-1 alpha
ef1a	Elongation factor 1-alpha

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	17
Solanum tuberosum	ACDC	Sprouting Tubers	5177	4
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	6
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	5
Solanum tuberosum	STOL	Stolon	6462	11
Solanum tuberosum	SWST	Stolon	5942	14
Solanum tuberosum	TBSK	Tuber Skin	4812	5
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	33
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	8
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	21
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	14
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (156)

Alignment image suppressed for unigene with 156 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22048	EFTU_Cterm	97
5	56339	EFTU_Cterm	71
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	128992	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	75

Preceding Unigenes (1)

Unigene	Build
SGN-U249423	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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