Sol Genomics Network

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Unigene SGN-U278426

Unigene Basic Information

Unigene ID:	SGN-U278426
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	278426
mRNA sequence:	Length: 1781 bp

>SGN-U278426 Solanum tuberosum #4 (4 members)
CGAGGCTTGTTTCTCAGCTGCCAAAATTAACTTGTAGCGTTGCCTCAAATTTCAGCTCCAATTTCTCTGCAATCGAAAACCCCATCTCAG
AGTTATGGAAAAAGATGCATCTTTCTTGTTTGGTGGCATCTCTTTCAACCGCAAAAAGTTTGCTCGCGATTTCGACAGATTTAAGGGGGA
AAAACATAGTTGATTCAGCTGAGAAATTGCAATTGATTGAGAAGGGAGGATAAAACTATTGATGATTCGTTAGAGAAAGTGGAGTTCGTC
GAGAATGAGATATCTGAAATGGAGGATGGGACAAGTACTAGCGTGAGTAAGAAGAGGAAGAGGAAGGAGAAGGGAGCAGTTCATGACTCA
GTGGAGGGATTTTCCGTCTTCAAGAGTTCAAAATTGAAAAAGGAAGCTGCAAGCGAAGAGACTGATCAATCTGTAAATGAACTGATTCAG
GGAAAAAAAGAATATTATCAACAATTGGAGAGGGACGCAATTTTTCGGAAGATGCACAACATTCATGTTTCAGGGAGTAACATCCCTTCG
CCATTGCACAATTTTGCTGAATTAAGATCAAGATATAAATGTCGATCATATCTATTACGAAATCTGGCAAAACTGGGATTTAAAGAACCA
ACGCCAATCCAAAGGCAGACTATTCCAGTCCTCTTATCTGGGCGGGAATGCTTTGCTTGTGCACCTACTGGTTTTGGCAAAACATTTGCT
TTTGTTTTTCCTATACTTATGAAACTCAAGCACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAGAGAGTTAGCTGCT
CAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCT
AAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCTTAAAGTTCGTATCCAAAAAAGAAAGCTTGATTTAAGTAGGGTTGAATTTC
TTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTC
TTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTA
GGAAAAATTCGGCTTCTGAAACAATAGAGCAAAAATTGGTATATGTAGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTG
CAGAGAGTTTGAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCAAAGGAGCTATATGACGAGCTAAAATTGGAAGATATTC
GACCCGATGTTATCCATTCAGACCTTTCTCAGATACAGAGAGAAAATGCTATTGATAATTTTAGAGCTGGAAAAACATGGGTTTTAATTG
CCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTTAACTGCGTGATAAATTACGATTTCCCAGACGCTGCTGCAGCATATATTC
ACAGAATTGGACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCG
CAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCAGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGACCACAAAGAG
AAACATTTCAACTCAGCCAGACATATGAAGCATCCCTCACAGTTTTGAGCATTATATCAAGTTTATAAACT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (4)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	21985	Helicase_C DEAD	273
5	56284	Helicase_C DEAD	133
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	128963	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	106

Preceding Unigenes (1)

Unigene	Build
SGN-U250724	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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