Sol Genomics Network

Unigene SGN-U278561

Unigene Basic Information

Unigene ID:	SGN-U278561
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	278561
mRNA sequence:	Length: 1193 bp

>SGN-U278561 Solanum tuberosum #4 (3 members)
TTTTTTGATTCCATATTGGATGTTCCAATTCCTTTGCCAGAATAGAGGAATAAAAACTAAAGAATGTTGTTGTAACAGAGAACCAACATG
GGAAAACAACAGAAGATAAAGCTTGTAATCACTTTCAGTAGCCTGTTCAAATACCCAATTTGCAGCATACAACAACATTTCCCGGGATAA
ATCCAAGTTCAGTTCTTTTGCCCCGTCACAAACATCAGCTTGACAGCTTGAAATTTTAGGAAACATCAGGGCATGCAAGAGCCTTGTATC
CATCACGAGTGAGGTAACCACAGAAGTTGGAGCCAGTGCATTACGTAATGCAGCAGAAGTTGAATAACAGGCAGTCTGAGCTCCCAGGAA
CTCGAGGTACATGCAATTTTGCCTTATACAAGTTTCTTTTGAATATATAAGATAGTCCCTCAATTTCAGGGGTGCTGGCCATCCCCCTGG
CATAGATAACAAACCAGCTTGAGAGGAGTTAAAGTCCTGAAACTTTGGTATTAGAGAAATAGGGACCCCCACCTGATCAACAATACTCTT
GCCTCCATCAACACCAAATAAAGATACATAGGTATGCTGCCAATTCGTTTGCAAGCTCCATGAGAACTGGTTACCGTTTGTAAGAAGTTG
CTGAAACAATTGCACCCAGCGTGCAAGTTCAAGAAGTGTGATCCTAATTTTCAGCAGTGCACCTTCAACCTTTGCATTCATGTGGGCATT
GGCCATCAAATCAACTAAATTACCAGCAGCTACCCCAGAAAGAACAATGTATCTCTTTGCATTCTCAAGCTCGATATCAATTTCAGTGCA
TTTGTCATAAAACAACCAATCAGGCTCCATCATGAAAATTTCAACCCCTCTATTTCTCATTGCACGTGAAACCTCACCATTTAGAGGGTT
AACTGTTAGAAACATCCGAAACTTAGGGTGTGGATGAAGAATTACAGGCTTTCCTTCAATTGTTCCACATTCATTTATGGTGATGGATCC
AGATTGTTCAACTAAAGAATTTATCCTGTCAAGAACCGTTGGGTTACAGAGATTTGCATTATCTAATACTATCCACTCTCCATTTTCTAT
AGCCTTTACAAGCATGCCAGTTACCCACTCAAACTTTGAGGAATGTGTCCTTTTTGAGTGACCTTCAAATTTCTTGATCATTGCAAGAGT
TGTATCCAAATCCTTCATAGACC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3201	Archaeal_ATPase VWA_CoxE VWF_A ATP_GTP_A_BS ReticulocyteBP CobS_ss Sig54_interact Cytidylate_kin UPF0079 NACHT_NTPase Rim_ABC_transpt Cons_hypoth61 AAA_ATPase_centr DUF815 Polycystin_cat	5
2	29206	Archaeal_ATPase VWA_CoxE VWF_A ATP_GTP_A_BS ReticulocyteBP CobS_ss Sig54_interact Cytidylate_kin UPF0079 NACHT_NTPase Rim_ABC_transpt Cons_hypoth61 AAA_ATPase_centr DUF815 Polycystin_cat	3
5	67449	Archaeal_ATPase VWA_CoxE VWF_A ATP_GTP_A_BS ReticulocyteBP CobS_ss Sig54_interact Cytidylate_kin UPF0079 NACHT_NTPase Rim_ABC_transpt Cons_hypoth61 AAA_ATPase_centr DUF815 Polycystin_cat	2
1.1	101392	Peptidase C48 SUMO/Sentrin/Ubl1 - Biological Process: proteolysis (GO:0006508) - Molecular Function: cysteine-type peptidase activity (GO:0008234)	341
2	124389	von Willebrand factor type A Sigma-54 factor interaction region - Molecular Function: ATP binding (GO:0005524) - Cellular Component: intracellular (GO:0005622) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: transcription factor binding (GO:0008134) ATPase associated with various cellular activities AAA-5 - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	3
5	136862	von Willebrand factor type A Sigma-54 factor interaction region - Molecular Function: ATP binding (GO:0005524) - Cellular Component: intracellular (GO:0005622) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: transcription factor binding (GO:0008134) ATPase associated with various cellular activities AAA-5 - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U250028	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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