Sol Genomics Network

Unigene SGN-U281332

Unigene Basic Information

Unigene ID:	SGN-U281332
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281332
mRNA sequence:	Length: 1528 bp

>SGN-U281332 Solanum tuberosum #4 (107 members)
TTTTAGAAGGAAACATACATTATCATATATCTCAACCAAGCTAAACTCAACAACCCATTAATAGTGATGCATAGTGTTGCAATAATACAA
TATACTGAAAGAAATAGAAAAAACAAACAGTATATCTGTTTGCTAAAGAGAATGTTACTTTACGATCGCGTGTTTAAGAGAGAGAAGAAT
TTCATTGATCAATTTGTCTATATTCACATAAGATGATCCTGCTGGTTTTGCAGCAGCTTCTTCAGCTAATATCTTCCATTCCATTGCCTT
TTTCTTCATCTCTTTGCCTTTCTCCCCGGTCATCAGCTCTCTTACAAGGGCTTCAACTTCATCCCTCTTCACATTATTGTTAATCTCCAT
TCCAATCCCCAACTTGGTACAACAAAACCAACAGTTAGTTGGCTGCTCTGCGAAAAACGGCCAGCAAATCATTGGCACCCCATTGCTAAT
ACTTTCTAGGGTCGAGTTCCATCCACTGTGAGTCAAGAACCCTCCAATTGCGGGGTGGTTAAAGGACTTTTTCTTGTTGGCACCAGCAAT
CTTTCAATTTCATACCATCAAACACTCACTTTTTTCTCTTATATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGC
TGGACAGGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCC
ATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCC
TGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATG
GGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGG
ATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCA
AGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTT
TGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTAT
GTTTGGATTCTTCGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC
TTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATAATTTTTGAATTTTGATTGTTCGATGGCCCTGTAAAGTAGT
TGTGACTTACTTGATAATAGAATGGTTCTTTTTTCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
lhcb1	chlorophyll a/b binding protein	chlorophyll binding
ftrbpot	Ferredoxin-thioredoxin-reductase catalytic subunit B	Ferredoxin-thioredoxin-reductase

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	7
Solanum tuberosum	MXFL	Floral buds	6603	3
Solanum tuberosum	MXLF	Leaves	6585	11
Solanum tuberosum	PPC	leaf 6 week old	5062	8
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	21
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	41
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	7
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (107)

Alignment image suppressed for unigene with 107 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	57	Chloro_ABbind	219
2	21999	Chloro_ABbind	201
5	56277	Chloro_ABbind	163
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	118429	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	201
5	128943	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	163

Preceding Unigenes (1)

Unigene	Build
SGN-U255390	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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