Sol Genomics Network

Unigene SGN-U282872

Unigene Basic Information

Unigene ID:	SGN-U282872
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	282872
mRNA sequence:	Length: 1097 bp

>SGN-U282872 Solanum tuberosum #4 (2 members)
ATTCCATGGAGCTTCAAAAGATCAGCTCAAAGTGTCTCCAAAACAGTGAAGAAACGGCTGAAGTGGTGAACCGGCGAATCAATCTGCTGA
CGTTGCATTTGAACCCGGTTCAGGACACCCCGGTTCAGGAATTGGAGCTGCTAAGATGCGCAGGGAAGATGAAGGCGATTAAGGTGAGCA
CGGAGACGCTGTCGGAGTACATGAGAGGGAAACATAGGGATATACAGGAAGAAGTATTTGCTTACTTTAATTCAAGACCGGAACTTCAAA
CACCGATTGAGATATCAAAAGATGAACATAGGGAATTGTGCATGAAACAGCTTGTGGGTTTGGTAAGGGAAGGTGGAATTAGGCCATTTA
GGTATGTGGTTGATGATCCGGCTAAGTATTTTGCGATTGCTGAAGCTGTGGGAAGCGTTGACATGTCACTTGGCATCAAAATGGGTGTTC
AGTACAGTCTATGGGGAGGTTCTGTTATCAACTTGGGAACTAAAAAGCACAGAGACAAATACTTTGACAGTATAGACAATATGGACTACC
CGGGATGCTTTGCAATGACGGAGCTTCATCATGGTTCAAATGTCCAAGGTCTTCAGACAGTTGCCACCTTTGATCCACTCACAGATGAAT
TCATAATTGACACGCCAAATGATGGGGCTATTAAATGGTGGATTGGTAATGCTGCCGTTCATGGGAAGTTTGCAACAGTTTTTGCAAGAC
TGATGTTACCAACTCATGATACAAAAGGTGTTACTGACATGGGTGTTCATGCATTTATTGTTCCGATAAGGGATATGAAAACCCACAAAA
CACTGCCAGGGGTTGAAATACATGATTGTGGCCATAAAGTTGGCTTGAATGGAGTAGATAATGGTGCGTTGAGATTCCGTTCAGTAAGAA
TTCCACGAGATAACCTTCTTAATCGATTTGGAGATGTTTCACGGGATGGGAGATACACCAGCAGCCTGCCTACAATTAGCAAAAGATTTG
CTGGCACACTTGGAGAACTTGTTGGTGGTAGAGTTGGCCTTGCGTATTCATCTGTGGGGTGTTCTCAAGATTGCTGTTGTTATTGCAACA
AGATAATTCTCTTCTGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	251	Acyl-CoA_dh_M Acyl-CoA_dh_C	62
2	22881	ACOX	18
5	59650	ACOX Acyl-CoA_dh_M IucA_IucC Acyl-CoA_dh_C	6
1.1	101614	Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase C-terminal-like	58
2	119591	Acyl-CoA oxidase C-terminal - Molecular Function: acyl-CoA oxidase activity (GO:0003997) - Cellular Component: peroxisome (GO:0005777) - Biological Process: fatty acid beta-oxidation (GO:0006635) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	14
5	132135	Acyl-CoA oxidase C-terminal - Molecular Function: acyl-CoA oxidase activity (GO:0003997) - Cellular Component: peroxisome (GO:0005777) - Biological Process: fatty acid beta-oxidation (GO:0006635) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type 1 - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA oxidase - Molecular Function: acyl-CoA oxidase activity (GO:0003997) - Cellular Component: peroxisome (GO:0005777) - Biological Process: fatty acid metabolism (GO:0006631) - Molecular Function: FAD binding (GO:0050660)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U261776	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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