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Unigene SGN-U287813

Unigene Basic Information

Unigene ID:	SGN-U287813
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	287813
mRNA sequence:	Length: 226 bp

>SGN-U287813 Solanum tuberosum #4 (1 members)
TAAGCTAATACAACGGGTGTCTCCTAAGAGTTACCAACAAGCTCTTATGAGACACCCGTTGTATTAGCTTAGCAAAGAAATCAGAAACCT
CAGGCAAGCCAAGCGCATGAGCTGCTTTTGTAGATACGTCTCCTAACATTAAGTACCTTTCTGGTGCTTTGAATGGATTATGTAGACCAT
GTTTCGGGCACTTGGACAAGCTCTCCACAAACGGCTGCAATTCTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E597840
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18449343\|gb\|AAL70109.1\|AF467542_1	110	7e-23	82.26	186 bp (82.3%)	-3
Description:	putative aldehyde dehydrogenase WIS1 [Triticum aestivum]
arabidopsis	blastx	At5G62530.1	103	2e-23	75.81	186 bp (82.3%)	-3
Description:	Symbols: ATP5CDH, P5CDH, ALDH12A1 \| ALDH12A1 (Aldehyde dehydrogenase 12A1); 1-pyrroline-5-carb…
swissprot	blastx	Q40255	105	1e-22	74.19	186 bp (82.3%)	-3
Description:	Probable aldehyde dehydrogenase OS=Linum usitatissimum GN=FIS1 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P229868 (73 Aa)

SELQPFVESLSKCPKHGLHNPFKAPERYLMLGDVSTKAAHALGLPEVSDFFAKLIQRVSHKSLLVTLRRHPLY

SignalP predicts non-secretion with a score of 0.041

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P98112 (64 Aa)

SELQPFVESLSKCPKHGLHNPFKAPERYLMLGDVSTKAAHALGLPEVSDFFAKLINGCLIRACW

SignalP predicts non-secretion with a score of 0.044

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	105	D1pyr5carbox3 Aldehyde_dehydr D1pyr5carbox2	125
2	24123	D1pyr5carbox3 CPase_L_D2 Aldehyde_dehydr D1pyr5carbox1 D1pyr5carbox2	9
5	58180	D1pyr5carbox3 CPase_L_D2 Aldehyde_dehydr D1pyr5carbox1 D1pyr5carbox2	9
1.1	101476	Aldehyde dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	111
2	120856	NAD-dependent aldehyde dehydrogenase - Molecular Function: oxidoreductase activity (GO:0016491) Aldehyde dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	8
5	131101	NAD-dependent aldehyde dehydrogenase - Molecular Function: oxidoreductase activity (GO:0016491) Aldehyde dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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