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Unigene SGN-U288150

Unigene Basic Information

Unigene ID:	SGN-U288150
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288150
mRNA sequence:	Length: 262 bp

>SGN-U288150 Solanum tuberosum #4 (1 members)
TGAAGTACACTTGGGGACAATCGCGAAAACTGAGTTAAGGAAATCCAGGCTTTGAAAACCTTATATATGACTCGTATATGTATCGCGAAA
TACAATATAAAATAAAATCAAAATGGTGCTGCATGAAAAAATAAAAGGCTGTATACCATAGTCTTGTAAAATATAGAAATCTACATACTG
ATGGTGAAAATTGATTCAGCAACTTTACAACTTATATTTTTAGAAACTTAATAAAGTCAACAAATAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E608601
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P230214 (58 Aa)

VVKLLNQFSPSVCRFLYFTRLWYTAFYFFMQHHFDFILYCISRYIYESYIRFSKPGFP

SignalP predicts non-secretion with a score of 0.348

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P98431 (17 Aa)

EVHLGTIAKTELRKSRL

SignalP predicts non-secretion with a score of 0.027

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	251	Acyl-CoA_dh_M Acyl-CoA_dh_C	62
2	22965	Tyr_pkinase_AS Acyl-CoA_dh_M APH ELK Choline_kinase Pept_cys_acsite Acyl-CoA_dh_C	17
5	58181	Tyr_pkinase_AS Acyl-CoA_dh_M APH ELK Choline_kinase Pept_cys_acsite Acyl-CoA_dh_C	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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