Sol Genomics Network

Unigene SGN-U288151

Unigene Basic Information

Unigene ID:	SGN-U288151
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288151
mRNA sequence:	Length: 783 bp

>SGN-U288151 Solanum tuberosum #4 (1 members)
ATTCAAAGAAAATCTGTTCTCCCCCTTCACCCACCATCTGAAACAACTAGAGAGGATAATATCGGGAATTTTGGAAGTGAAAGCCAAATT
CAAGTAACCCCTACGAGTGGGAAATTTGTGCCTAGTGAGAAGGTTCAAGATCTGAGAGACAAATTGATAAAGTTCATGGAGGATCATATA
TATCCAAAAGAAAGTGACTTTTACAAGCTTGCACAGTCTACCATGCGCTGGACAATTCACCCAGACGAGGAGAAGTTAAAGGATCTGGCA
AAAAGAGAAGGCCTTTGGAACCTGTGGATACCGTTTGATAGTGCTGCACGGGCAAGAGAAGTGATCTTTGGCAGCGGAAATGATTCTCTA
GTTGAAAACAAATTCAATCGCTTTTTAGGTGCTGGCCTTTCGAACCTCGAGTATGGGTATCTTTGTGAAATTATGGGTCGTTCTATTTGT
GCGCCACAGATTTTCAACTGTGGGGCGCCTGATACAGGAAATATGGAGGTATTACTTCGGTATGGGAATGAGGAACAGATAAAGGAATGG
CTTGTCCCCTTGCTTGAGGGAAAGACACGGTCTGGCTTTGCAATGACAGAGCCACAAGTTGCTTCCTCAGATGCCACTAATATAGAATGT
TCCATCAAAAGACATGGAGACTCTTATATCATNCAATGGGAAGAAGTGGTGGACCAGTGGAGCCATGGGATCCGAGGGTGCAACTTCTCA
TTGTGATGGGAAAAACTGACTTAACTGCTCCCTAGCATAAACAACATCCCATGATCTTGGTAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E460944
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	251	Acyl-CoA_dh_M Acyl-CoA_dh_C	62
2	22965	Tyr_pkinase_AS Acyl-CoA_dh_M APH ELK Choline_kinase Pept_cys_acsite Acyl-CoA_dh_C	17
5	58181	Tyr_pkinase_AS Acyl-CoA_dh_M APH ELK Choline_kinase Pept_cys_acsite Acyl-CoA_dh_C	9
1.1	101614	Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase C-terminal-like	58
2	119600	Protein kinase-like Acyl-CoA dehydrogenase C-terminal-like Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Aminoglycoside phosphotransferase Acyl-CoA dehydrogenase type 1 - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	14
5	130993	Protein kinase-like Acyl-CoA dehydrogenase C-terminal-like Acyl-CoA dehydrogenase middle and N-terminal Acyl-CoA dehydrogenase central region - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Acyl-CoA dehydrogenase type1/2 C-terminal - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118) Aminoglycoside phosphotransferase Acyl-CoA dehydrogenase type 1 - Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) - Biological Process: electron transport (GO:0006118)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U260077	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
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